Michael Hucka

According to our database1, Michael Hucka authored at least 43 papers between 1990 and 2019.

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Bibliography

2019
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019.
J. Integrative Bioinformatics, 2019

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
J. Integrative Bioinformatics, 2019

Harmonizing semantic annotations for computational models in biology.
Briefings in Bioinformatics, 2019

2018
Software search is not a science, even among scientists: A survey of how scientists and engineers find software.
Journal of Systems and Software, 2018

Nostril: A nonsense string evaluator written in Python.
J. Open Source Software, 2018

Spiral: splitters for identifiers in source code files.
J. Open Source Software, 2018

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017.
J. Integrative Bioinformatics, 2018

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.
J. Integrative Bioinformatics, 2018

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.
J. Integrative Bioinformatics, 2018

2017
A brief history of COMBINE.
Proceedings of the 2017 Winter Simulation Conference, 2017

2016
Toward Community Standards and Software for Whole-Cell Modeling.
IEEE Trans. Biomed. Engineering, 2016

Software vs. data in the context of citation.
PeerJ PrePrints, 2016

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.
J. Integrative Bioinformatics, 2016

SBML Level 3 package: Groups, Version 1 Release 1.
J. Integrative Bioinformatics, 2016

MOCCASIN: converting MATLAB ODE models to SBML.
Bioinformatics, 2016

2015
BioModels: ten-year anniversary.
Nucleic Acids Research, 2015

SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3.
J. Integrative Bioinformatics, 2015

Specifications of Standards in Systems and Synthetic Biology.
J. Integrative Bioinformatics, 2015

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.
J. Integrative Bioinformatics, 2015

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions.
J. Integrative Bioinformatics, 2015

JSBML 1.0: providing a smorgasbord of options to encode systems biology models.
Bioinformatics, 2015

2014
Systems Biology Markup Language (SBML).
Proceedings of the Encyclopedia of Computational Neuroscience, 2014

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.
BMC Bioinformatics, 2014

2013
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.
BMC Systems Biology, 2013

Path2Models: large-scale generation of computational models from biochemical pathway maps.
BMC Systems Biology, 2013

2011
Minimum Information About a Simulation Experiment (MIASE).
PLoS Computational Biology, 2011

Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language.
BMC Systems Biology, 2011

JSBML: a flexible Java library for working with SBML.
Bioinformatics, 2011

A Profile of Today's SBML-Compatible Software.
Proceedings of the IEEE 7th International Conference on E-Science, 2011

2010
BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models.
BMC Systems Biology, 2010

2009
SBML2LATEX: Conversion of SBML files into human-readable reports.
Bioinformatics, 2009

2008
LibSBML: an API Library for SBML.
Bioinformatics, 2008

2006
BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.
Nucleic Acids Research, 2006

CellML2SBML: conversion of CellML into SBML.
Bioinformatics, 2006

SBMLToolbox: an SBML toolbox for MATLAB users.
Bioinformatics, 2006

Challenges for modeling and simulation methods in systems biology.
Proceedings of the Winter Simulation Conference WSC 2006, 2006

2004
MathSBML: a package for manipulating SBML-based biological models.
Bioinformatics, 2004

2003
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Bioinformatics, 2003

2002
NeuroML for plug and play neuronal modeling.
Neurocomputing, 2002

The ERATO Systems Biology Workbench: Enabling Interaction and Exchange Between Software Tools for Computational Biology.
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

1991
An Analysis of Soar as an Integrated Architecture.
SIGART Bulletin, 1991

Robo-Soar: An integration of external interaction, planning, and learning using Soar.
Robotics and Autonomous Systems, 1991

1990
Correcting and Extending Domain Knowledge using Outside Guidance.
Proceedings of the Machine Learning, 1990


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