Kentaro Shimizu

Orcid: 0000-0002-3245-0052

According to our database1, Kentaro Shimizu authored at least 56 papers between 1982 and 2022.

Collaborative distances:



In proceedings 
PhD thesis 




Feedback-AVPGAN: Feedback-guided generative adversarial network for generating antiviral peptides.
J. Bioinform. Comput. Biol., December, 2022

Prediction of protein mononucleotide binding sites using AlphaFold2 and machine learning.
Comput. Biol. Chem., 2022

EXPRORER: Rational Cosolvent Set Construction Method for Cosolvent Molecular Dynamics Using Large-Scale Computation.
J. Chem. Inf. Model., 2021

Differential expression analysis using a model-based gene clustering algorithm for RNA-seq data.
BMC Bioinform., 2021

3D Object Detection Method Based on YOLO and K-Means for Image and Point Clouds.
CoRR, 2020

YOLO and K-Means Based 3D Object Detection Method on Image and Point Cloud.
CoRR, 2020

Identifying short disorder-to-order binding regions in disordered proteins with a deep convolutional neural network method.
J. Bioinform. Comput. Biol., 2019

MoRFPred_en: Sequence-based prediction of MoRFs using an ensemble learning strategy.
J. Bioinform. Comput. Biol., 2019

Development of a sugar-binding residue prediction system from protein sequences using support vector machine.
Comput. Biol. Chem., 2017

Development of a prediction system for tail-anchored proteins.
BMC Bioinform., 2016

Automatic generation of bioinformatics tools for predicting protein-ligand binding sites.
Bioinform., 2016

An effective system for managing biological data.
Proceedings of the 2016 International Conference on Behavioral, 2016

Evaluation of methods for differential expression analysis on multi-group RNA-seq count data.
BMC Bioinform., 2015

Tyrosine Kinase Ligand-Receptor Pair Prediction by Using Support Vector Machine.
Adv. Bioinformatics, 2015

Coarse-grained molecular dynamics simulations of protein-ligand binding.
J. Comput. Chem., 2014

TCC: an R package for comparing tag count data with robust normalization strategies.
BMC Bioinform., 2013

Office in the cloud: Web-based cloud platform for Telcos services.
Proceedings of the 17th International Conference on Intelligence in Next Generation Networks, 2013

A normalization strategy for comparing tag count data.
Algorithms Mol. Biol., 2012

Office on Demand: New cloud service platform for carrier.
Proceedings of the 16th International Conference on Intelligence in Next Generation Networks, 2012

Evaluating methods for ranking differentially expressed genes applied to MicroArray Quality Control data.
BMC Bioinform., 2011

Multicanonical <i>ab inito</i> QM/MM molecular dynamics simulation of a peptide in an aqueous environment.
J. Comput. Chem., 2010

Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines.
Adv. Bioinformatics, 2010

A Self-organizing State Space Approach to Inferring Time-Varying Causalities between Regulatory Proteins.
Proceedings of the Information Technology in Bio- and Medical Informatics, 2010

Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity.
Algorithms Mol. Biol., 2009

Computational Protocol for Screening GPI-anchored Proteins.
Proceedings of the Bioinformatics and Computational Biology, 2009

A weighted average difference method for detecting differentially expressed genes from microarray data.
Algorithms Mol. Biol., 2008

High-Density Surface Reconstruction of Fine Arts and Documents for Complete Reproduction and Counterfeit Detection.
Proceedings of the IEEE International Conference on Networking, Sensing and Control, 2007

ROKU: a novel method for identification of tissue-specific genes.
BMC Bioinform., 2006

High-Precision Geometric Modeling of 3D Artifacts for Virtual Restoration.
Proceedings of the IEEE International Conference on Virtual Environments, 2006

High-Density Scanning Combined with Digital Image of Real Objects for Complete Reproduction of Cultural Artifacts.
Proceedings of the 2006 IEEE International Conference on Multisensor Fusion and Integration for Intelligent Systems, 2006

Reuse of reconstructed model of human skull for anthropological and anthropoid morphological model estimation.
Proceedings of the 2006 IEEE International Conference on Information Reuse and Integration, 2006

Identification of GPI-(like)-Anchored Proteins by Using SVM.
Proceedings of the Interdisciplinary and Multidisciplinary Research in Computer Science, 2006

Insight of the Signal Motif of GPI-(like)-anchored Proteins by using SVM.
Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, 2006

Distributed Shared Arrays: Portable Shared-Memory Programming Interface for Multiple Computer Systems.
Clust. Comput., 2004

Programming Environment Based on Distributed Shared Arrays for High-Performance Scientific Computing.
Proceedings of the 2004 Symposium on Applications and the Internet Workshops (SAINT 2004 Workshops), 2004

Design and Implementation of a Parallel Programming Environment Based on Distributed Shared Arrays.
Proceedings of the High Performance Computing, 5th International Symposium, 2003

Preemptive Resource Management: Defending against Resource Monopolizing DoS.
Proceedings of the 21st IASTED International Multi-Conference on Applied Informatics (AI 2003), 2003

New method for parallel computation of Hessian matrix of conformational energy function in internal coordinates.
J. Comput. Chem., 2002

Automatic Improvement of Scheduling Policies in Parsley Parallel Programming Environment.
Proceedings of the International Conference on Parallel and Distributed Computing Systems, 2002

Access route control by an extended key/lock scheme.
Comput. Syst. Sci. Eng., 2001

Prediction of protein structure classes and secondary structures by means of hidden Markov models.
Syst. Comput. Jpn., 1999

Parallel algorithm for efficient calculation of second derivatives of conformational energy function in internal coordinates.
J. Comput. Chem., 1998

Time-of-Reduction-Recovery Predicton in Neural Networks of Variable Topology to Improve Enzyme Classification.
Proceedings of the International ICSC / IFAC Symposium on Neural Computation (NC 1998), 1998

Flow Control and Routing Algorithms in WAPSN.
Comput. Commun., 1995

A performance comparison of adaptive and static load balancing in heterogeneous distributed systems.
Proceedings of the Proceedings 28st Annual Simulation Symposium (SS '95), 1995

A Paraellel and Nonblocking Updating Mechanism for Replicated Directory Files in Distributed Systems.
J. Parallel Distributed Comput., 1994

Adaptive Bidding Load Balancing Algorithms in Heterogeneous Distributed Systems.
Proceedings of the MASCOTS '94, Proceedings of the Second International Workshop on Modeling, Analysis, and Simulation On Computer and Telecommunication Systems, January 31, 1994

Improving the Reliability of Name Resolution Mechanism in Distributed Operating Systems.
Proceedings of the 12th International Conference on Distributed Computing Systems, 1992

The Galaxy Distributed Operating System.
Computer, 1991

Process Migration in the GALAXY Distributed Operating System.
Proceedings of the Fifth International Parallel Processing Symposium, Proceedings, Anaheim, California, USA, April 30, 1991

Flexible User-Definable Memory Coherence Scheme in Distributed Shared Memory of GALAXY.
Proceedings of the Distributed Memory Computing, 2nd European Conference, 1991

Highly Concurrent Directory Management in the Galaxy Distributed System.
Proceedings of the 10th International Conference on Distributed Computing Systems (ICDCS 1990), May 28, 1990

CPC (Cyclic Pipeline Computer) - An Architecture Suited for Josephson and Pipelined-Memory Machines.
IEEE Trans. Computers, 1989

Hierarchical Object Groups in Distributed Operating Systems.
Proceedings of the 8th International Conference on Distributed Computing Systems, 1988

A Portable Logic Simulation System for Development of FLATS Machine.
Proceedings of the RIMS Symposia on Software Science and Engineering II, 1984

Design of a Lisp Machine - FLATS.
Proceedings of the 1982 ACM Symposium on LISP and Functional Programming, 1982