Kevin Y. Yip

Nat. Mach. Intell., 2022

Deep learning identifies and quantifies recombination hotspot determinants.

[BibT_eX]

[DOI]

Yu Li

Siyuan Chen

Trisevgeni Rapakoulia

Hiroyuki Kuwahara

Xin Gao

Bioinform., 2022

2020

A unified framework for integrative study of heterogeneous gene regulatory mechanisms.

[BibT_eX]

[DOI]

Nat. Mach. Intell., 2020

Flexible k-mers with variable-length indels for identifying binding sequences of protein dimers.

[BibT_eX]

[DOI]

Chenyang Hong

Briefings Bioinform., 2020

Shaping the nebulous enhancer in the era of high-throughput assays and genome editing.

[BibT_eX]

[DOI]

Briefings Bioinform., 2020

2018

A network approach to exploring the functional basis of gene-gene epistatic interactions in disease susceptibility.

[BibT_eX]

[DOI]

Bioinform., 2018

A comprehensive web tool for toehold switch design.

[BibT_eX]

[DOI]

Chung Hang Jonathan Choi

Bioinform., 2018

2017

OMBlast: alignment tool for optical mapping using a seed-and-extend approach.

[BibT_eX]

[DOI]

Alden King-Yung Leung

Bioinform., 2017

OMTools: a software package for visualizing and processing optical mapping data.

[BibT_eX]

[DOI]

Alden King-Yung Leung

Nana Jin

Ting-Fung Chan

Bioinform., 2017

2016

A novel method for discovering local spatial clusters of genomic regions with functional relationships from DNA contact maps.

[BibT_eX]

[DOI]

Xihao Hu

Christina Huan Shi

Bioinform., 2016

Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations.

[BibT_eX]

[DOI]

Briefings Bioinform., 2016

Towards a More Accurate Error Model for BioNano Optical Maps.

[BibT_eX]

[DOI]

Proceedings of the Bioinformatics Research and Applications - 12th International Symposium, 2016

2014

Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data.

[BibT_eX]

[DOI]

Terrence Chi-Kong Lau

Siu-Ming Yiu

Bioinform., 2014

ECplot: an online tool for making standardized plots from large datasets for bioinformatics publications.

[BibT_eX]

[DOI]

Bioinform., 2014

2013

Mining Order-Preserving Submatrices from Data with Repeated Measurements.

[BibT_eX]

[DOI]

IEEE Trans. Knowl. Data Eng., 2013

2011

Decision Trees for Uncertain Data.

[BibT_eX]

[DOI]

IEEE Trans. Knowl. Data Eng., 2011

Metric and trigonometric pruning for clustering of uncertain data in 2D geometric space.

[BibT_eX]

[DOI]

Inf. Syst., 2011

ACT: aggregation and correlation toolbox for analyses of genome tracks.

[BibT_eX]

[DOI]

Bioinform., 2011

2009

A semi-supervised approach to projected clustering with applications to microarray data.

[BibT_eX]

[DOI]

Int. J. Data Min. Bioinform., 2009

Multi-level learning: improving the prediction of protein, domain and residue interactions by allowing information flow between levels.

[BibT_eX]

[DOI]

BMC Bioinform., 2009

Training set expansion: an approach to improving the reconstruction of biological networks from limited and uneven reliable interactions.

[BibT_eX]

[DOI]

Mark Gerstein

Bioinform., 2009

2008

HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2008

Case Report: Development of Grid-like Applications for Public Health Using Web 2.0 Mashup Techniques.

[BibT_eX]

[DOI]

Matthew Scotch

Kei-Hoi Cheung

J. Am. Medical Informatics Assoc., 2008

An integrated system for studying residue coevolution in proteins.

[BibT_eX]

[DOI]

Bioinform., 2008

A Two-Stage Audio Retrieval Method for Searching Unannotated Audio Clips.

[BibT_eX]

[DOI]

Proceedings of the Tenth IEEE International Symposium on Multimedia (ISM2008), 2008

Mining Order-Preserving Submatrices from Data with Repeated Measurements.

[BibT_eX]

[DOI]

Proceedings of the 8th IEEE International Conference on Data Mining (ICDM 2008), 2008

2007

Mining periodic patterns with gap requirement from sequences.

[BibT_eX]

[DOI]

ACM Trans. Knowl. Discov. Data, 2007

On mining micro-array data by Order-Preserving Submatrix.

[BibT_eX]

[DOI]

Int. J. Bioinform. Res. Appl., 2007

LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics.

[BibT_eX]

[DOI]

BMC Bioinform., 2007

The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks.

[BibT_eX]

[DOI]

Bioinform., 2007

2006

Progressive skylining over Web-accessible databases.

[BibT_eX]

[DOI]

Data Knowl. Eng., 2006

SemBiosphere: A Semantic Web Approach to Recommending Microarray Clustering Services.

[BibT_eX]

[DOI]

Proceedings of the Biocomputing 2006, 2006

Input Validation for Semi-supervised Clustering.

[BibT_eX]

[DOI]

Proceedings of the Workshops Proceedings of the 6th IEEE International Conference on Data Mining (ICDM 2006), 2006

Efficient Clustering of Uncertain Data.

[BibT_eX]

[DOI]

Proceedings of the 6th IEEE International Conference on Data Mining (ICDM 2006), 2006

2005

CLUSTAG: hierarchical clustering and graph methods for selecting tag SNPs.

[BibT_eX]

[DOI]

Bioinform., 2005

YeastHub: a semantic web use case for integrating data in the life sciences domain.

[BibT_eX]

[DOI]

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

On Discovery of Extremely Low-Dimensional Clusters using Semi-Supervised Projected Clustering.

[BibT_eX]

[DOI]

Proceedings of the 21st International Conference on Data Engineering, 2005

2004

HARP: A Practical Projected Clustering Algorithm.

[BibT_eX]

[DOI]

IEEE Trans. Knowl. Data Eng., 2004

Identifying projected clusters from gene expression profiles.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2004

A web services choreography scenario for interoperating bioinformatics applications.

[BibT_eX]

[DOI]

BMC Bioinform., 2004

2003

A highly-usable projected clustering algorithm for gene expression profiles.

[BibT_eX]

[DOI]