Kresten Lindorff-Larsen

According to our database, Kresten Lindorff-Larsen authored at least 14 papers between 2009 and 2025.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of four.

2025

Zero-shot protein stability prediction by inverse folding models: a free energy interpretation.

Jes Frellsen, Maher M. Kassem, Tone Bengtsen, Lars Olsen, Kresten Lindorff-Larsen, Jesper Ferkinghoff-Borg, Wouter Boomsma

CoRR, June, 2025

Optimized Protein-Excipient Interactions in the Martini 3 Force Field.

Tobias M. Prass, Kresten Lindorff-Larsen, Patrick Garidel, Michaela Blech, Lars V. Schäfer

J. Chem. Inf. Model., 2025

2024

Accurate model and ensemble refinement using cryo-electron microscopy maps and Bayesian inference.

Samuel E. Hoff, F. Emil Thomasen, Kresten Lindorff-Larsen, Massimiliano Bonomi

PLoS Comput. Biol., 2024

2021

DEER-PREdict: Software for efficient calculation of spin-labeling EPR and NMR data from conformational ensembles.

Giulio Tesei, João M. Martins, Micha B. A. Kunze, Yong Wang, Ramon Crehuet, Kresten Lindorff-Larsen

PLoS Comput. Biol., 2021

2020

Computational Studies of Substrate Transport and Specificity in a Phospholipid Flippase.

Yong Wang, Kresten Lindorff-Larsen

Dataset, June, 2020

Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution.

Andreas Haahr Larsen, Yong Wang, Sandro Bottaro, Sergei Grudinin, Lise Arleth, Kresten Lindorff-Larsen

PLoS Comput. Biol., 2020

What Will Computational Modeling Approaches Have to Say in the Era of Atomistic Cryo-EM Data?

James S. Fraser, Kresten Lindorff-Larsen, Massimiliano Bonomi

J. Chem. Inf. Model., 2020

2019

Bayesian-Maximum-Entropy Reweighting of IDP Ensembles Based on NMR Chemical Shifts.

Ramon Crehuet, Pedro J. Buigues, Xavier Salvatella, Kresten Lindorff-Larsen

Entropy, 2019

2018

An automatic seating plan algorithm.

Kresten Lindorff-Larsen

PeerJ Prepr., 2018

2015

ENCORE: Software for Quantitative Ensemble Comparison.

Matteo Tiberti, Elena Papaleo, Tone Bengtsen, Wouter Boomsma, Kresten Lindorff-Larsen

PLoS Comput. Biol., 2015

2014

Communication Routes in ARID Domains between Distal Residues in Helix 5 and the DNA-Binding Loops.

Gaetano Invernizzi, Matteo Tiberti, Matteo Lambrughi, Kresten Lindorff-Larsen, Elena Papaleo

PLoS Comput. Biol., 2014

Combining Experiments and Simulations Using the Maximum Entropy Principle.

Wouter Boomsma, Jesper Ferkinghoff-Borg, Kresten Lindorff-Larsen

PLoS Comput. Biol., 2014

2013

PHAISTOS: A framework for Markov chain Monte Carlo simulation and inference of protein structure.

Wouter Boomsma, Jes Frellsen, Tim Harder, Sandro Bottaro, Kristoffer E. Johansson, Pengfei Tian, Kasper Stovgaard, Christian Andreetta, Simon Olsson, Jan B. Valentin, Lubomir D. Antonov, Anders S. Christensen, Mikael Borg, Jan H. Jensen, Kresten Lindorff-Larsen, Jesper Ferkinghoff-Borg, Thomas Hamelryck

J. Comput. Chem., 2013

2009

Millisecond-scale molecular dynamics simulations on Anton.

David E. Shaw, Ron O. Dror, John K. Salmon, J. P. Grossman, Kenneth M. Mackenzie, Joseph A. Bank, Cliff Young, Martin M. Deneroff, Brannon Batson, Kevin J. Bowers, Edmond Chow, Michael P. Eastwood, Doug Ierardi, John L. Klepeis, Jeffrey Kuskin, Richard H. Larson, Kresten Lindorff-Larsen, Paul Maragakis, Mark A. Moraes, Stefano Piana, Yibing Shan, Brian Towles

Proceedings of the ACM/IEEE Conference on High Performance Computing, 2009