David E. Shaw
Orcid: 0000-0001-8265-5761Affiliations:
- Columbia University, New York, NY, USA
- D. E. Shaw Research
According to our database1,
David E. Shaw
authored at least 62 papers
between 1975 and 2023.
Collaborative distances:
Collaborative distances:
Timeline
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Online presence:
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on deshaw.com
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on orcid.org
On csauthors.net:
Bibliography
2023
J. Chem. Inf. Model., July, 2023
Discovery and Validation of the Binding Poses of Allosteric Fragment Hits to Protein Tyrosine Phosphatase 1b: From Molecular Dynamics Simulations to X-ray Crystallography.
J. Chem. Inf. Model., May, 2023
2022
Proceedings of the IEEE International Symposium on High-Performance Computer Architecture, 2022
2021
Proceedings of the International Conference for High Performance Computing, 2021
Proceedings of the IEEE Hot Chips 33 Symposium, 2021
2020
J. Chem. Inf. Model., 2020
AutoPH4: An Automated Method for Generating Pharmacophore Models from Protein Binding Pockets.
J. Chem. Inf. Model., 2020
CoRR, 2020
2018
2015
Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium, 2015
2014
Membrane Interaction of Bound Ligands Contributes to the Negative Binding Cooperativity of the EGF Receptor.
PLoS Comput. Biol., 2014
Anton 2: Raising the Bar for Performance and Programmability in a Special-Purpose Molecular Dynamics Supercomputer.
Proceedings of the International Conference for High Performance Computing, 2014
Proceedings of the ACM/IEEE 41st International Symposium on Computer Architecture, 2014
2013
Proceedings of the 2012 IEEE International Symposium on Performance Analysis of Systems & Software, 2013
Extending the Generality of Molecular Dynamics Simulations on a Special-Purpose Machine.
Proceedings of the 27th IEEE International Symposium on Parallel and Distributed Processing, 2013
Anton: a special-purpose machine that achieves a hundred-fold speedup in biomolecular simulations.
Proceedings of the 22nd International Symposium on High-Performance Parallel and Distributed Computing, 2013
The role of cascade, a cycle-based simulation infrastructure, in designing the anton special-purpose supercomputers.
Proceedings of the 50th Annual Design Automation Conference 2013, 2013
Proceedings of the Architectural Support for Programming Languages and Operating Systems, 2013
2012
J. Comput. Aided Mol. Des., 2012
2011
Proceedings of the Encyclopedia of Parallel Computing, 2011
Overcoming Communication Latency Barriers in Massively Parallel Scientific Computation.
IEEE Micro, 2011
Proceedings of the Conference on High Performance Computing Networking, 2011
Tight Certification Techniques for Digit-by-Rounding Algorithms with Application to a New 1/sqrt(x) Design.
Proceedings of the 20th IEEE Symposium on Computer Arithmetic, 2011
Radix-8 Digit-by-Rounding: Achieving High-Performance Reciprocals, Square Roots, and Reciprocal Square Roots.
Proceedings of the 20th IEEE Symposium on Computer Arithmetic, 2011
2010
IEEE Trans. Signal Process., 2010
Proceedings of the Conference on High Performance Computing Networking, 2010
Proceedings of the 8th USENIX Conference on File and Storage Technologies, 2010
2009
Proceedings of the ACM/IEEE Conference on High Performance Computing, 2009
Proceedings of the ACM/IEEE Conference on High Performance Computing, 2009
Anton: A Specialized Machine for Millisecond-Scale Molecular Dynamics Simulations of Proteins.
Proceedings of the 19th IEEE Symposium on Computer Arithmetic, 2009
2008
Commun. ACM, 2008
A scalable parallel framework for analyzing terascale molecular dynamics simulation trajectories.
Proceedings of the ACM/IEEE Conference on High Performance Computing, 2008
Architectures and algorithms for millisecond-scale molecular dynamics simulations of proteins.
Proceedings of the 41st Annual IEEE/ACM International Symposium on Microarchitecture (MICRO-41 2008), 2008
Hierarchical simulation-based verification of Anton, a special-purpose parallel machine.
Proceedings of the 26th International Conference on Computer Design, 2008
High-throughput pairwise point interactions in Anton, a specialized machine for molecular dynamics simulation.
Proceedings of the 14th International Conference on High-Performance Computer Architecture (HPCA-14 2008), 2008
Incorporating flexibility in Anton, a specialized machine for molecular dynamics simulation.
Proceedings of the 14th International Conference on High-Performance Computer Architecture (HPCA-14 2008), 2008
Early formal verification of conditional coverage points to identify intrinsically hard-to-verify logic.
Proceedings of the 45th Design Automation Conference, 2008
Simulation and embedded software development for Anton, a parallel machine with heterogeneous multicore ASICs.
Proceedings of the 6th International Conference on Hardware/Software Codesign and System Synthesis, 2008
2007
J. Comput. Phys., 2007
2006
PHASE: a new engine for pharmacophore perception, 3D QSAR model development, and 3D database screening: 1. Methodology and preliminary results.
J. Comput. Aided Mol. Des., 2006
Molecular dynamics - Scalable algorithms for molecular dynamics simulations on commodity clusters.
Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006
2005
Erraturm - A fast, scalable method for the parallel evaluation of distance-limited pairwise particle interactions.
J. Comput. Chem., 2005
A fast, scalable method for the parallel evaluation of distance-limited pairwise particle interactions.
J. Comput. Chem., 2005
1998
Proceedings of the VLDB'98, 1998
1987
J. Parallel Distributed Comput., 1987
Artif. Intell., 1987
1986
IEEE Trans. Software Eng., 1986
J. Parallel Distributed Comput., 1986
On the application of massively parallel SIMD tree machines to certain intermediate-level vision tasks.
Comput. Vis. Graph. Image Process., 1986
Proceedings of the 5th National Conference on Artificial Intelligence. Philadelphia, 1986
1985
Proceedings of the 9th International Joint Conference on Artificial Intelligence. Los Angeles, 1985
Relational Query Processing on the Non-Von Supercomputer.
Proceedings of the Query Processing in Database Systems, 1985
1984
The semi-automatic generation of processing element control paths for highly parallel machines.
Proceedings of the 21st Design Automation Conference, 1984
SIMD and MSIMD Variants of the NON-VON Supercomputer.
Proceedings of the COMPCON'84, Digest of Papers, Twenty-Eighth IEEE Computer Society International Conference, San Francisco, California, USA, February 27, 1984
1983
Architecture and Applications of DADO: A Large-Scale Parallel Computer for Artificial Intelligence.
Proceedings of the 8th International Joint Conference on Artificial Intelligence. Karlsruhe, 1983
1982
Proceedings of the National Conference on Artificial Intelligence, 1982
1981
NON-VON: A Parallel Machine Architecture for Knowledge-Based Information Processing.
Proceedings of the 7th International Joint Conference on Artificial Intelligence, 1981
1980
Proceedings of the Papers of the Fifth Workshop on Computer Architecture for Non-Numeric Processing, 1980
1975
Proceedings of the Advance Papers of the Fourth International Joint Conference on Artificial Intelligence, 1975