Yibing Shan

According to our database, Yibing Shan authored at least 6 papers between 2006 and 2022.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of four.

2022

How does a small molecule bind at a cryptic binding site?

Yibing Shan, Venkatesh P. Mysore, Abba E. Leffler, Eric T. Kim, Shiori Sagawa, David E. Shaw

PLoS Comput. Biol., 2022

2014

Membrane Interaction of Bound Ligands Contributes to the Negative Binding Cooperativity of the EGF Receptor.

Anton Arkhipov, Yibing Shan, Eric T. Kim, David E. Shaw

PLoS Comput. Biol., 2014

2009

Millisecond-scale molecular dynamics simulations on Anton.

David E. Shaw, Ron O. Dror, John K. Salmon, J. P. Grossman, Kenneth M. Mackenzie, Joseph A. Bank, Cliff Young, Martin M. Deneroff, Brannon Batson, Kevin J. Bowers, Edmond Chow, Michael P. Eastwood, Doug Ierardi, John L. Klepeis, Jeffrey Kuskin, Richard H. Larson, Kresten Lindorff-Larsen, Paul Maragakis, Mark A. Moraes, Stefano Piana, Yibing Shan, Brian Towles

Proceedings of the ACM/IEEE Conference on High Performance Computing, 2009

2008

Anton, a special-purpose machine for molecular dynamics simulation.

David E. Shaw, Martin M. Deneroff, Ron O. Dror, Jeffrey Kuskin, Richard H. Larson, John K. Salmon, Cliff Young, Brannon Batson, Kevin J. Bowers, Jack C. Chao, Michael P. Eastwood, Joseph Gagliardo, J. P. Grossman, C. Richard Ho, Doug Ierardi, István Kolossváry, John L. Klepeis, Timothy Layman, Christine McLeavey, Mark A. Moraes, Rolf Mueller, Edward C. Priest, Yibing Shan, Jochen Spengler, Michael Theobald, Brian Towles, Stanley C. Wang

Commun. ACM, 2008

High-throughput pairwise point interactions in Anton, a specialized machine for molecular dynamics simulation.

Richard H. Larson, John K. Salmon, Ron O. Dror, Martin M. Deneroff, Cliff Young, J. P. Grossman, Yibing Shan, John L. Klepeis, David E. Shaw

Proceedings of the 14th International Conference on High-Performance Computer Architecture (HPCA-14 2008), 2008

2006

Molecular dynamics - Scalable algorithms for molecular dynamics simulations on commodity clusters.

Kevin J. Bowers, Edmond Chow, Huafeng Xu, Ron O. Dror, Michael P. Eastwood, Brent A. Gregersen, John L. Klepeis, István Kolossváry, Mark A. Moraes, Federico D. Sacerdoti, John K. Salmon, Yibing Shan, David E. Shaw

Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006