Lars Malmström

According to our database, Lars Malmström authored at least 15 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics.

Carlos Gueto-Tettay, Di Tang, Lotta Happonen, Moritz Heusel, Hamed Khakzad, Johan Malmström, Lars Malmström

PLoS Comput. Biol., January, 2023

2021

Structural determination of Streptococcus pyogenes M1 protein interactions with human immunoglobulin G using integrative structural biology.

Hamed Khakzad, Lotta Happonen, Yasaman Karami, Sounak Chowdhury, Gizem Ertürk Bergdahl, Michael Nilges, Guy Tran Van Nhieu, Johan Malmström, Lars Malmström

PLoS Comput. Biol., 2021

Cheetah-MS: a web server to model protein complexes using tandem cross-linking mass spectrometry data.

Hamed Khakzad, Lotta Happonen, Johan Malmström, Lars Malmström

Bioinform., 2021

2019

Greedy de novo motif discovery to construct motif repositories for bacterial proteomes.

Hamed Khakzad, Johan Malmström, Lars Malmström

BMC Bioinform., 2019

2017

FAIRDOMHub: a repository and collaboration environment for sharing systems biology research.

Katherine Wolstencroft, Olga Krebs, Jacky L. Snoep, Natalie J. Stanford, Finn Bacall, Martin Golebiewski, Rostyk Kuzyakiv, Quyen Nguyen, Stuart Owen, Stian Soiland-Reyes, Jakub Straszewski, David D. van Niekerk, Alan R. Williams, Lars Malmström, Bernd Rinn, Wolfgang Müller, Carole A. Goble

Nucleic Acids Res., 2017

2015

iPortal: the swiss grid proteomics portal: Requirements and new features based on experience and usability considerations.

Peter Z. Kunszt, Lorenz Blum, Béla Hullár, Emanuel Schmid, Adam Srebniak, Witold Wolski, Bernd Rinn, Franz-Josef Elmer, Chandrasekhar Ramakrishnan, Andreas Quandt, Lars Malmström

Concurr. Comput. Pract. Exp., 2015

DIANA - algorithmic improvements for analysis of data-independent acquisition MS data.

Johan Teleman, Hannes L. Röst, George Rosenberger, Uwe Schmitt, Lars Malmström, Johan Malmström, Fredrik Levander

Bioinform., 2015

Efficient visualization of high-throughput targeted proteomics experiments: TAPIR.

Hannes L. Röst, George Rosenberger, Ruedi Aebersold, Lars Malmström

Bioinform., 2015

2014

aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data.

George Rosenberger, Christina Ludwig, Hannes L. Röst, Ruedi Aebersold, Lars Malmström

Bioinform., 2014

2013

Improving the Swiss Grid Proteomics Portal: Requirements and new Features based on Experience and Usability Considerations.

Peter Z. Kunszt, Lorenz Blum, Béla Hullár, Emanuel Schmid, Adam Srebniak, Witold Wolski, Bernd Rinn, Franz-Josef Elmer, Chandrasekhar Ramakrishnan, Andreas Quandt, Lars Malmström

Proceedings of the 5th International Workshop on Science Gateways, 2013

2011

openBIS: a flexible framework for managing and analyzing complex data in biology research.

Angela Bauch, Izabela Adamczyk, Piotr Buczek, Franz-Josef Elmer, Kaloyan Enimanev, Pawel Glyzewski, Manuel Kohler, Tomasz Pylak, Andreas Quandt, Chandrasekhar Ramakrishnan, Christian Beisel, Lars Malmström, Ruedi Aebersold, Bernd Rinn

BMC Bioinform., 2011

Xwalk: computing and visualizing distances in cross-linking experiments.

Abdullah Kahraman, Lars Malmström, Ruedi Aebersold

Bioinform., 2011

Accelerating 3D Protein Modeling Using Cloud Computing: Using Rosetta as a Service on the IBM SmartCloud.

Peter Z. Kunszt, Lars Malmström, Nicola Fantini, Wibke Sudholt, Marcel Lautenschlager, Roland Reifler, Stefan Ruckstuhl

Proceedings of the IEEE 7th International Conference on E-Science, 2011

2006

2DDB - a bioinformatics solution for analysis of quantitative proteomics data.

Lars Malmström, György Marko-Varga, Gunilla Westergren-Thorsson, Thomas Laurell, Johan Malmström

BMC Bioinform., 2006

2005

The Yeast Resource Center Public Data Repository.

Michael Riffle, Lars Malmström, Trisha N. Davis

Nucleic Acids Res., 2005