Michael Nilges

Orcid: 0000-0002-1451-8092

According to our database1, Michael Nilges authored at least 26 papers between 2003 and 2022.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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Bibliography

2022
InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein-protein interactions.
Bioinform., 2022

2021
Structural determination of Streptococcus pyogenes M1 protein interactions with human immunoglobulin G using integrative structural biology.
PLoS Comput. Biol., 2021

The iPPI-DB initiative: a community-centered database of protein-protein interaction modulators.
Bioinform., 2021

2020
ARIAweb: a server for automated NMR structure calculation.
Nucleic Acids Res., 2020

2019
mkgridXf: Consistent Identification of Plausible Binding Sites Despite the Elusive Nature of Cavities and Grooves in Protein Dynamics.
J. Chem. Inf. Model., 2019

Minimal NMR distance information for rigidity of protein graphs.
Discret. Appl. Math., 2019

2018
Tuning interval Branch-and-Prune for protein structure determination.
J. Glob. Optim., 2018

2016
Inferential Structure Determination of Chromosomes from Single-Cell Hi-C Data.
PLoS Comput. Biol., 2016

Building Graphs To Describe Dynamics, Kinetics, and Energetics in the d-ALa: d-Lac Ligase VanA.
J. Chem. Inf. Model., 2016

Improved large-scale prediction of growth inhibition patterns using the NCI60 cancer cell line panel.
Bioinform., 2016

2015
Identification of binding sites and favorable ligand binding moieties by virtual screening and self-organizing map analysis.
BMC Bioinform., 2015

An algorithm to enumerate all possible protein conformations verifying a set of distance constraints.
BMC Bioinform., 2015

An automatic tool to analyze and cluster macromolecular conformations based on self-organizing maps.
Bioinform., 2015

2014
ModBase, a database of annotated comparative protein structure models and associated resources.
Nucleic Acids Res., 2014

Functional Motions Modulating VanA Ligand Binding Unraveled by Self-Organizing Maps.
J. Chem. Inf. Model., 2014

2013
Erratum: A convective replica-exchange method for sampling new energy basins.
J. Comput. Chem., 2013

A convective replica-exchange method for sampling new energy basins.
J. Comput. Chem., 2013

Distance Geometry in Structural Biology: New Perspectives.
Proceedings of the Distance Geometry: Theory, Methods, and Applications, 2013

2011
Grid computing for improving conformational sampling in NMR structure calculation.
Bioinform., 2011

Influence of Pruning Devices on the Solution of Molecular Distance Geometry Problems.
Proceedings of the Experimental Algorithms - 10th International Symposium, 2011

2010
Comparative Evaluation of 3D Virtual Ligand Screening Methods: Impact of the Molecular Alignment on Enrichment.
J. Chem. Inf. Model., 2010

2008
Structural Biology by NMR: Structure, Dynamics, and Interactions.
PLoS Comput. Biol., 2008

ISD: a software package for Bayesian NMR structure calculation.
Bioinform., 2008

2007
ARIA2: Automated NOE assignment and data integration in NMR structure calculation.
Bioinform., 2007

Biskit - A software platform for structural bioinformatics.
Bioinform., 2007

2003
ARIA: automated NOE assignment and NMR structure calculation.
Bioinform., 2003


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