Stian Soiland-Reyes

Orcid: 0000-0001-9842-9718

  • University of Manchester

According to our database1, Stian Soiland-Reyes authored at least 51 papers between 2008 and 2024.

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PhD thesis 


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Evaluating FAIR Digital Object and Linked Data as distributed object systems.
PeerJ Comput. Sci., 2024

Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness.
Data Sci. J., January, 2023

Recording provenance of workflow runs with RO-Crate.
CoRR, 2023

The EOSC-Life Workflow Collaboratory for the Life Sciences.
Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

RO-Crates Meets FAIR Digital Objects.
Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

Ten simple rules for making a software tool workflow-ready.
PLoS Comput. Biol., 2022

Making Canonical Workflow Building Blocks Interoperable across Workflow Languages.
Data Intell., 2022

The Specimen Data Refinery: A Canonical Workflow Framework and FAIR Digital Object Approach to Speeding up Digital Mobilisation of Natural History Collections.
Data Intell., 2022

Packaging research artefacts with RO-Crate.
Data Sci., 2022

Methods included.
Commun. ACM, 2022

Semantic micro-contributions with decentralized nanopublication services.
PeerJ Comput. Sci., 2021

Perspectives on automated composition of workflows in the life sciences.
F1000Research, 2021

Workflows Community Summit: Advancing the State-of-the-art of Scientific Workflows Management Systems Research and Development.
CoRR, 2021

Methods Included: Standardizing Computational Reuse and Portability with the Common Workflow Language.
CoRR, 2021

Workflows Community Summit: Bringing the Scientific Workflows Community Together.
CoRR, 2021

ISO 23494: Biotechnology - Provenance Information Model for Biological Specimen And Data.
Proceedings of the Provenance and Annotation of Data and Processes, 2021

Unique, Persistent, Resolvable: Identifiers as the Foundation of FAIR.
Data Intell., 2020

FAIR Computational Workflows.
Data Intell., 2020

The role of metadata in reproducible computational research.
CoRR, 2020

RO-Crate, a lightweight approach to Research Object data packaging.
Proceedings of Workshop on Research Objects (RO2019), 2019

Capturing interoperable reproducible workflows with Common Workflow Language.
Proceedings of Workshop on Research Objects (RO2018), 2018

Research Object Community Update.
Proceedings of Workshop on Research Objects (RO2018), 2018

The Archive and Package (arcp) URI Scheme.
Proceedings of the 14th IEEE International Conference on e-Science, 2018

FAIRDOMHub: a repository and collaboration environment for sharing systems biology research.
Nucleic Acids Res., 2017

Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis.
Data Sci. Eng., 2017

Drug Discovery and Big Linked Data.
Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

Developing a Benchmark Suite for Semantic Web Data from Existing Workflows.
Proceedings of the Workshop on Benchmarking Linked Data (BLINK 2016) co-located with the 15th International Semantic Web Conference (ISWC), 2016

I'll take that to go: Big data bags and minimal identifiers for exchange of large, complex datasets.
Proceedings of the 2016 IEEE International Conference on Big Data (IEEE BigData 2016), 2016

Semantic-Web Access to Patent Annotations.
Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

COMBINE archive: One File To Share Them All.
CoRR, 2014

Community-driven development for computational biology at Sprints, Hackathons and Codefests.
BMC Bioinform., 2014

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.
BMC Bioinform., 2014

Structuring research methods and data with the research object model: genomics workflows as a case study.
J. Biomed. Semant., 2014

A suite of APIs for the management of research objects.
Proceedings of the ISWC Developers Workshop 2014, 2014

Research Objects for Audio Processing: Capturing Semantics for Reproducibility.
Proceedings of the AES International Conference on Semantic Audio 2014, 2014

The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.
Nucleic Acids Res., 2013

Web Annotation as a First-Class Object.
IEEE Internet Comput., 2013

Taverna Mobile: Taverna workflows on Android.
CoRR, 2013

PAV ontology: provenance, authoring and versioning.
J. Biomed. Semant., 2013

A workflow PROV-corpus based on taverna and wings.
Proceedings of the Joint 2013 EDBT/ICDT Conferences, 2013

From Workflows to Research Objects: An Architecture for Preserving the Semantics of Science.
Proceedings of the Second International Workshop on Linked Science 2012, 2012

RO-Manager: A Tool for Creating and Manipulating Research Objects to Support Reproducibility and Reuse in Sciences.
Proceedings of the Second International Workshop on Linked Science 2012, 2012

Workflow forever: semantic web semantic models and tools for preserving and digitally publishing computational experiments.
Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, 2011

Fostering Scientific Workflow Preservation through Discovery of Substitute Services.
Proceedings of the IEEE 7th International Conference on E-Science, 2011

caGrid Workflow Toolkit: A Taverna based workflow tool for cancer Grid.
BMC Bioinform., 2010

Taverna, Reloaded.
Proceedings of the Scientific and Statistical Database Management, 2010

Scientific Workflows as Services in caGrid: A Taverna and gRAVI Approach.
Proceedings of the IEEE International Conference on Web Services, 2009

Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data.
BMC Bioinform., 2008

Automated manipulation of systems biology models using libSBML within Taverna workflows.
Bioinform., 2008