Lisa Bastarache
According to our database1,
Lisa Bastarache
authored at least 36 papers
between 2009 and 2023.
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Bibliography
2023
Systematic replication of smoking disease associations using survey responses and EHR data in the <i>All of Us</i> Research Program.
J. Am. Medical Informatics Assoc., December, 2023
Next-generation phenotyping: introducing phecodeX for enhanced discovery research in medical phenomics.
Bioinform., October, 2023
J. Am. Medical Informatics Assoc., June, 2023
2022
The phers R package: using phenotype risk scores based on electronic health records to study Mendelian disease and rare genetic variants.
Bioinform., October, 2022
A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources.
J. Am. Medical Informatics Assoc., 2022
Cox regression is robust to inaccurate EHR-extracted event time: an application to EHR-based GWAS.
Bioinform., 2022
The PheRS R package: Phenotype risk score generation and analysis tool using electronic health record data.
Proceedings of the AMIA 2022, 2022
2021
Phenotyping coronavirus disease 2019 during a global health pandemic: Lessons learned from the characterization of an early cohort.
J. Biomed. Informatics, 2021
Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: a perspective from 15 academic medical centers.
J. Am. Medical Informatics Assoc., 2021
Systematic replication of smoking disease associations in the All of Us Research Program.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
Mapping the Read2/CTV3 controlled clinical terminologies to Phecodes in UK Biobank primary care electronic health records: implementation and evaluation.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
Using Genomic Association Replication Rates as an EHR Quality Measure via the Phenotype-Genotype Reference Map (PGRM).
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
2020
Proceedings of the AMIA 2020, 2020
2019
Improving the phenotype risk score as a scalable approach to identifying patients with Mendelian disease.
J. Am. Medical Informatics Assoc., 2019
2018
2017
Evaluating electronic health record data sources and algorithmic approaches to identify hypertensive individuals.
J. Am. Medical Informatics Assoc., 2017
Association of BMI and Obesity Genetic Risk Score with Surgical Procedures Through a Procedure-wide Association Study.
Proceedings of the AMIA 2017, 2017
Proceedings of the AMIA 2017, 2017
2015
2014
R PheWAS: data analysis and plotting tools for phenome-wide association studies in the R environment.
Bioinform., 2014
Proceedings of the AMIA 2014, 2014
2013
Development and evaluation of an ensemble resource linking medications to their indications.
J. Am. Medical Informatics Assoc., 2013
Validation and Enhancement of a Computable Medication Indication Resource (MEDI) Using a Large Practice-based Dataset.
Proceedings of the AMIA 2013, 2013
Using PheWAS and Natural Language Processing to Discover Clinical Associations for Congenital Chest Deformities.
Proceedings of the AMIA 2013, 2013
A Natural Language Processing Algorithm to define a Venous Thromboembolism Phenotype.
Proceedings of the AMIA 2013, 2013
Proceedings of the AMIA 2013, 2013
Classifying ICD-9 codes into meaningful disease categories: A comparison between two coding systems.
Proceedings of the AMIA 2013, 2013
2012
A General Purpose Phenotype Algorithm for Venous Thromboembolism Using Billing Codes and Natural Language Processing.
Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012
Proceedings of the AMIA 2012, 2012
Using PheWAS to Assess Pleiotropy of Genetic Risk Scores for Rheumatoid Arthritis and Coronary Artery Disease in the eMERGE Network.
Proceedings of the AMIA 2012, 2012
Proceedings of the AMIA 2012, 2012
2010
Integrating existing natural language processing tools for medication extraction from discharge summaries.
J. Am. Medical Informatics Assoc., 2010
Extracting timing and status descriptors for colonoscopy testing from electronic medical records.
J. Am. Medical Informatics Assoc., 2010
PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations.
Bioinform., 2010
2009
J. Biomed. Informatics, 2009
Development of a Natural Language Processing System to Identify Timing and Status of Colonoscopy Testing in Electronic Medical Records.
Proceedings of the AMIA 2009, 2009