Lorenzo Farina

  • Sapienza University of Rome, Italy

According to our database1, Lorenzo Farina authored at least 35 papers between 1996 and 2022.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.



In proceedings 
PhD thesis 


Online presence:

On csauthors.net:


StaRTrEK: in silico estimation of RNA half-lives from genome-wide time-course experiments without transcriptional inhibition.
BMC Bioinform., 2022

Differential Co-expression Network Analysis to Investigate Sexual Dimorphism in Colon Cancer.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19.
PLoS Comput. Biol., 2021

SEaCorAl: Identifying and contrasting the regulation-correlation bias in RNA-Seq paired expression data of patient groups.
Comput. Biol. Medicine, 2021

Protein-Protein Interaction Prediction via Graph Signal Processing.
IEEE Access, 2021

Connectivity Significance for Disease Gene Prioritization in an Expanding Universe.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Network Inference and Reconstruction in Bioinformatics.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

NEMESIS (NEtwork MEdicine analySIS): Towards Visual Exploration of Network Medicine Data.
Proceedings of the 14th International Joint Conference on Computer Vision, 2019

Biological Random Walks: Integrating heterogeneous data in disease gene prioritization.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2019

Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer.
BMC Syst. Biol., 2014

Combining optimization and machine learning techniques for genome-wide prediction of human cell cycle-regulated genes.
Bioinform., 2014

Internally Positive Representation of a Class of Continuous Time Systems.
IEEE Trans. Autom. Control., 2012

Stochastic Modeling of Expression Kinetics Identifies Messenger Half-Lives and Reveals Sequential Waves of Co-ordinated Transcription and Decay.
PLoS Comput. Biol., 2012

Identification of Regulatory Network Motifs from Gene Expression Data.
J. Math. Model. Algorithms, 2010

Discussion on: "Representation of a Class of MIMO Systems via Internally Positive Realization".
Eur. J. Control, 2010

Discrete-time models for gene transcriptional regulation networks.
Proceedings of the 49th IEEE Conference on Decision and Control, 2010

A method for Internally Positive Realization of continuous time systems.
Proceedings of the 49th IEEE Conference on Decision and Control, 2010

mRNA stability and the unfolding of gene expression in the long-period yeast metabolic cycle.
BMC Syst. Biol., 2009

Embedding mRNA Stability in Correlation Analysis of Time-Series Gene Expression Data.
PLoS Comput. Biol., 2008

Correction to "A Note on Minimality of Positive Realizations".
IEEE Trans. Circuits Syst. I Regul. Pap., 2006

Nonnegative matrices in digital signal processing.
Signal Process., 2006

The Geometry of the Reachability Set for Linear Discrete-time Systems with Positive Controls.
SIAM J. Matrix Anal. Appl., 2006

A tutorial on the positive realization problem.
IEEE Trans. Autom. Control., 2004

Eigenvalue regions for positive systems.
Syst. Control. Lett., 2004

A high speed and low power CMOS current comparator for photon counting systems.
Proceedings of the 2004 International Symposium on Circuits and Systems, 2004

Minimal positive realizations: a survey of recent results and open problems.
Kybernetika, 2003

Positive and compartmental systems.
IEEE Trans. Autom. Control., 2002

Linear programming approach to constrained feedback control.
Int. J. Syst. Sci., 2002

Identification of positive linear systems with Poisson output transformation.
Autom., 2002

On model consistency in compartmental systems identification.
Autom., 2002

Embedding a-priori positivity in systems modelling.
Proceedings of the American Control Conference, 2002

How many compartments do we really need? [LTI systems].
Proceedings of the American Control Conference, 2002

An Algebraic Approach to the Construction of Polyhedral Invariant Cones.
SIAM J. Matrix Anal. Appl., 2000

Polyhedral reachable set with positive controls.
Math. Control. Signals Syst., 1997

Discrete-time filtering via charge routing networks.
Signal Process., 1996