Patrick Aloy

According to our database, Patrick Aloy authored at least 21 papers between 1997 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

BQsupports: systematic assessment of the support and novelty of new biomedical associations.

Adrià Fernández-Torras, Martina Locatelli, Martino Bertoni, Patrick Aloy

Bioinform., September, 2023

2020

A reference map of the human binary protein interactome.

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoît Charloteaux, Dong-Sic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon-gang Choi, Claudia Colabella, Georges Coppin, Cassandra D'Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Tasan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nat., 2020

Bioactivity Profile Similarities to Expand the Repertoire of COVID-19 Drugs.

Miquel Duran-Frigola, Martino Bertoni, Roi Blanco, Víctor Martínez, Eduardo Pauls, Víctor Alcalde, Gemma Turon, Núria Villegas, Adrià Fernández-Torras, Carles Pons, Lidia Mateo, Oriol Guitart-Pla, Pau Badia-i-Mompel, Aleix Gimeno, Nicolas Soler, Isabelle Brun-Heath, Hugo Zaragoza, Patrick Aloy

J. Chem. Inf. Model., 2020

2017

Detecting similar binding pockets to enable systems polypharmacology.

Miquel Duran-Frigola, Lydia Siragusa, Eytan Ruppin, Xavier Barril, Gabriele Cruciani, Patrick Aloy

PLoS Comput. Biol., 2017

A PanorOmic view of personal cancer genomes.

Lidia Mateo, Oriol Guitart-Pla, Carles Pons, Miquel Duran-Frigola, Roberto Mosca, Patrick Aloy

Nucleic Acids Res., 2017

2015

Using neighborhood cohesiveness to infer interactions between protein domains.

Joan Segura, Carlos Oscar Sánchez Sorzano, Jesús Cuenca Alba, Patrick Aloy, José María Carazo

Bioinform., 2015

IntSide: a web server for the chemical and biological examination of drug side effects.

Teresa Juan-Blanco, Miquel Duran-Frigola, Patrick Aloy

Bioinform., 2015

2014

3did: a catalog of domain-based interactions of known three-dimensional structure.

Roberto Mosca, Arnaud Céol, Amelie Stein, Roger Olivella, Patrick Aloy

Nucleic Acids Res., 2014

2012

NetAligner - a network alignment server to compare complexes, pathways and whole interactomes.

Roland A. Pache, Arnaud Céol, Patrick Aloy

Nucleic Acids Res., 2012

2011

3did: identification and classification of domain-based interactions of known three-dimensional structure.

Amelie Stein, Arnaud Céol, Patrick Aloy

Nucleic Acids Res., 2011

2010

Novel Peptide-Mediated Interactions Derived from High-Resolution 3-Dimensional Structures.

Amelie Stein, Patrick Aloy

PLoS Comput. Biol., 2010

2009

Pushing Structural Information into the Yeast Interactome by High-Throughput Protein Docking Experiments.

Roberto Mosca, Carles Pons, Juan Fernández-Recio, Patrick Aloy

PLoS Comput. Biol., 2009

3did Update: domain-domain and peptide-mediated interactions of known 3D structure.

Amelie Stein, Alejandro Panjkovich, Patrick Aloy

Nucleic Acids Res., 2009

Exploiting gene deletion fitness effects in yeast to understand the modular architecture of protein complexes under different growth conditions.

Roland A. Pache, M. Madan Babu, Patrick Aloy

BMC Syst. Biol., 2009

2008

Approved Drug Mimics of Short Peptide Ligands from Protein Interaction Motifs.

Laavanya Parthasarathi, Fergal P. Casey, Amelie Stein, Patrick Aloy, Denis C. Shields

J. Chem. Inf. Model., 2008

2005

3did: interacting protein domains of known three-dimensional structure.

Amelie Stein, Robert B. Russell, Patrick Aloy

Nucleic Acids Res., 2005

2003

InterPreTS: protein Interaction Prediction through Tertiary Structure.

Patrick Aloy, Robert B. Russell

Bioinform., 2003

2001

Classification of protein disulphide-bridge topologies.

José M. Mas, Patrick Aloy, Marc A. Martí-Renom, Baldomero Oliva, R. de Llorens, Francesc X. Avilés, Enrique Querol

J. Comput. Aided Mol. Des., 2001

2000

Refinement of modelled structures by knowledge-based energy profiles and secondary structure prediction: Application to the human procarboxypeptidase A2.

Patrick Aloy, José M. Mas, Marc A. Martí-Renom, Enrique Querol, Francesc X. Avilés, Baldomero Oliva

J. Comput. Aided Mol. Des., 2000

1998

A Computational System for Modeling Flexible Protein-Protein and protein-DNA Docking.

Michael J. E. Sternberg, Patrick Aloy, Henry A. Gabb, Richard M. Jackson, Gidon Moont, Enrique Querol, Francesc X. Avilés

Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998

1997

'TransMem': a neural network implemented in Excel spreadsheets for predicting transmembrane domains of proteins.

Patrick Aloy, Juan Cedano, Baldomero Oliva, Francesc X. Avilés, Enrique Querol

Comput. Appl. Biosci., 1997