Thomas E. Ferrin

According to our database1, Thomas E. Ferrin authored at least 26 papers between 1992 and 2017.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

Links

On csauthors.net:

Bibliography

2017
An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins.
PLoS Computational Biology, 2017

Biocuration in the structure-function linkage database: the anatomy of a superfamily.
Database, 2017

2016
DASP3: identification of protein sequences belonging to functionally relevant groups.
BMC Bioinform., 2016

2015
cddApp: a Cytoscape app for accessing the NCBI conserved domain database.
Bioinform., 2015

RRDistMaps: a UCSF Chimera tool for viewing and comparing protein distance maps.
Bioinform., 2015

2014
Enhancing UCSF Chimera through web services.
Nucleic Acids Res., 2014

The Structure-Function Linkage Database.
Nucleic Acids Res., 2014

2011
ModBase, a database of annotated comparative protein structure models, and associated resources.
Nucleic Acids Res., 2011

clusterMaker: a multi-algorithm clustering plugin for Cytoscape.
BMC Bioinform., 2011

Improving the quality of protein similarity network clustering algorithms using the network edge weight distribution.
Bioinform., 2011

2007
structureViz: linking Cytoscape and UCSF Chimera.
Bioinform., 2007

2006
The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse.
Nucleic Acids Res., 2006

Tools for integrated sequence-structure analysis with UCSF Chimera.
BMC Bioinform., 2006

2005
Representing Structure-Function Relationships in Mechanistically Diverse Enzyme Superfamilies.
Proceedings of the Biocomputing 2005, 2005

Enhancing Data Sharing in Collaborative Research Projects with DASH.
Proceedings of the Biocomputing 2005, 2005

2004
MODBASE, a database of annotated comparative protein structure models, and associated resources.
Nucleic Acids Res., 2004

UCSF Chimera - A visualization system for exploratory research and analysis.
J. Comput. Chem., 2004

2003
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells.
Nucleic Acids Res., 2003

The Structure Superposition Database.
Nucleic Acids Res., 2003

MINRMS: an efficient algorithm for determining protein structure similarity using root-mean-squared-distance.
Bioinform., 2003

SNP Analysis and Presentation in the Pharmacogenetics of Membrane Transporters Project.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

2001
High Performance Computing for Computational Biology - Session Introduction.
Proceedings of the 6th Pacific Symposium on Biocomputing, 2001

Chimera: Affordable Desktop Molecular Modeling on Linux Workstations.
Proceedings of the 5th Annual Linux Showcase & Conference 2001, 2001

1999
Molecules to Maps: Tools for Visualization & Interaction - Session Introduction.
Proceedings of the 4th Pacific Symposium on Biocomputing, 1999

1998
Molecules to maps: tools for visualization and interaction in support of computational biology.
Bioinform., 1998

1992
The MidasPlus molecular modeling system.
Proceedings of the Conference on Human Factors in Computing Systems, 1992


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