Matthieu Schapira

According to our database, Matthieu Schapira authored at least 22 papers between 2000 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

The Need for Continuing Blinded Pose- and Activity Prediction Benchmarks.

Christian Kramer, John D. Chodera, Kelly L. Damm-Ganamet, Michael K. Gilson, Judith Guenther, Uta F. Lessel, Richard A. Lewis, David L. Mobley, Eva Nittinger, Adam Pecina, Matthieu Schapira, W. Patrick Walters

J. Chem. Inf. Model., 2025

CACHE Challenge #2: Targeting the RNA Site of the SARS-CoV-2 Helicase Nsp13.

Oleksandra Herasymenko, Madhushika Silva, Abd Al-Aziz A. Abu-Saleh, Ayaz Ahmad, Jesus Alvarado-Huayhuaz, Oscar Emilio Arrúa Arce, Roly J. Armstrong, Cheryl H. Arrowsmith, Kelly E. Bachta, Hartmut Beck, Dénes Berta, Mateusz K. Bieniek, Vincent Blay, Albina Bolotokova, Philip E. Bourne, Marko Breznik, Peter J. Brown, Aaron D. G. Campbell, Emanuele Carosati, Irene Chau, Daniel J. Cole, Ben Cree, Wim Dehaen, Katrin Denzinger, Karina dos Santos Machado, Ian Dunn, Prasannavenkatesh Durai, Kristina Edfeldt, Aled M. Edwards, Darren Fayne, Daniel Felfoldi, Kallie Friston, Pegah Ghiabi, Elisa Gibson, Judith Guenther, Anders Gunnarsson, Alexander Hillisch, Douglas R. Houston, Jan Halborg Jensen, Rachel J. Harding, Kate S. Harris, Laurent Hoffer, Anders Hogner, Joshua T. Horton, Scott Houliston, Judd F. Hultquist, Ashley Hutchinson, John J. Irwin, Marko Jukic, Shubhangi Kandwal, Andrea Karlova, Vittorio L. Katis, Ryan P. Kich, Dmitri Kireev, David Koes, Nicole L. Inniss, Uta F. Lessel, Sijie Liu, Peter Loppnau, Wei Lu, Sam Alexander Martino, Miles McGibbon, Jens Meiler, Akhila Mettu, Sam Money-Kyrle, Rocco Moretti, Yurii S. Moroz, Charuvaka Muvva, Joseph A. Newman, Leon Obendorf, Brooks Paige, Amit Pandit, Keunwan Park, Sumera Perveen, Rachael Pirie, Gennady Poda, Mykola V. Protopopov, Vera Pütter, Federico Ricci, Natalie J. Roper, Edina Rosta, Margarita Rzhetskaya, Yogesh Sabnis, Karla J. F. Satchell, Frederico Schmitt Kremer, Thomas Scott, Almagul Seitova, Casper Steinmann, Valerij Talagayev, Olga O. Tarkhanova, Natalie J. Tatum, Dakota Treleaven, Adriano Velasque Werhli, W. Patrick Walters, Xiaowen Wang, Jude Wells, Geoffrey Wells, Yvonne Westermaier, Gerhard Wolber, Lars Wortmann, Jixian Zhang, Zheng Zhao, Shuangjia Zheng, Matthieu Schapira

J. Chem. Inf. Model., 2025

Active Learning-Guided Hit Optimization for the Leucine-Rich Repeat Kinase 2 WDR Domain Based on In Silico Ligand-Binding Affinities.

Filipp Gusev, Evgeny Gutkin, Francesco Gentile, Fuqiang Ban, S. Benjamin Koby, Fengling Li, Irene Chau, Suzanne Ackloo, Cheryl H. Arrowsmith, Albina Bolotokova, Pegah Ghiabi, Elisa Gibson, Levon Halabelian, Scott Houliston, Rachel J. Harding, Ashley Hutchinson, Peter Loppnau, Sumera Perveen, Almagul Seitova, Hong Zeng, Matthieu Schapira, Artem Cherkasov, Olexandr Isayev, Maria G. Kurnikova

J. Chem. Inf. Model., 2025

2024

Probe my Pathway (PmP): a portal to explore the chemical coverage of the human Reactome.

Haejin Angela Kwak, Lihua Liu, Matthieu Schapira

Database J. Biol. Databases Curation, January, 2024

Benchmarking Methods for PROTAC Ternary Complex Structure Prediction.

Evianne Rovers, Matthieu Schapira

J. Chem. Inf. Model., 2024

CACHE Challenge #1: Targeting the WDR Domain of LRRK2, A Parkinson's Disease Associated Protein.

Fengling Li, Suzanne Ackloo, Cheryl H. Arrowsmith, Fuqiang Ban, Christopher J. Barden, Hartmut Beck, Jan Beránek, Francois Berenger, Albina Bolotokova, Guillaume Bret, Marko Breznik, Emanuele Carosati, Irene Chau, Yu Chen, Artem Cherkasov, Dennis Della Corte, Katrin Denzinger, Aiping Dong, Sorin Draga, Ian Dunn, Kristina Edfeldt, Aled M. Edwards, Merveille K. I. Eguida, Paul Eisenhuth, Lukas Friedrich, Alexander Fuerll, Spencer S. Gardiner, Francesco Gentile, Pegah Ghiabi, Elisa Gibson, Marta Glavatskikh, Christoph Gorgulla, Judith Guenther, Anders Gunnarsson, Filipp Gusev, Evgeny Gutkin, Levon Halabelian, Rachel J. Harding, Alexander Hillisch, Laurent Hoffer, Anders Hogner, Scott Houliston, John J. Irwin, Olexandr Isayev, Aleksandra Ivanova, Célien Jacquemard, Austin J. Jarrett, Jan H. Jensen, Dmitri Kireev, Julian Kleber, S. Benjamin Koby, David Koes, Ashutosh Kumar, Maria G. Kurnikova, Alina Kutlushina, Uta F. Lessel, Fabian Liessmann, Sijie Liu, Wei Lu, Jens Meiler, Akhila Mettu, Guzel Minibaeva, Rocco Moretti, Connor J. Morris, Chamali Narangoda, Theresa Noonan, Leon Obendorf, Szymon Pach, Amit Pandit, Sumera Perveen, Gennady Poda, Pavel G. Polishchuk, Kristina Puls, Vera Pütter, Didier Rognan, Dylan Roskams-Edris, Christina E. M. Schindler, François Sindt, Vojtech Spiwok, Casper Steinmann, Rick L. Stevens, Valerij Talagayev, Damon Tingey, Oanh Vu, W. Patrick Walters, Xiaowen Wang, Zhenyu Wang, Gerhard Wolber, Clemens Alexander Wolf, Lars Wortmann, Hong Zeng, Carlos A. Zepeda, Kam Y. J. Zhang, Jixian Zhang, Shuangjia Zheng, Matthieu Schapira

J. Chem. Inf. Model., 2024

Subpocket Similarity-Based Hit Identification for Challenging Targets: Application to the WDR Domain of LRRK2.

Merveille K. I. Eguida, Guillaume Bret, François Sindt, Fengling Li, Irene Chau, Suzanne Ackloo, Cheryl H. Arrowsmith, Albina Bolotokova, Pegah Ghiabi, Elisa Gibson, Levon Halabelian, Scott Houliston, Rachel J. Harding, Ashley Hutchinson, Peter Loppnau, Sumera Perveen, Almagul Seitova, Hong Zeng, Matthieu Schapira, Didier Rognan

J. Chem. Inf. Model., 2024

2023

Discovery of a Novel DCAF1 Ligand Using a Drug-Target Interaction Prediction Model: Generalizing Machine Learning to New Drug Targets.

Serah W. Kimani, Julie Owen, Stuart R. Green, Fengling Li, Yanjun Li, Aiping Dong, Peter J. Brown, Suzanne Ackloo, David Kuter, Cindy Yang, Miranda Macaskill, Stephen Scott Mackinnon, Cheryl H. Arrowsmith, Matthieu Schapira, Vijay Shahani, Levon Halabelian

J. Chem. Inf. Model., July, 2023

2022

ChemBioPort: an online portal to navigate the structure, function and chemical inhibition of the human proteome.

Lihua Liu, Evianne Rovers, Matthieu Schapira

Database J. Biol. Databases Curation, 2022

2020

Ten simple rules for open human health research.

Aïda Bafeta, Jason Bobe, Jon Clucas, Pattie Pramila Gonsalves, Célya Gruson-Daniel, Kathy L. Hudson, Arno Klein, Anirudh Krishnakumar, Anna McCollister-Slipp, Ariel B. Lindner, Dusan Misevic, John A. Naslund, Camille Nebeker, Aki Nikolaidis, Irene V. Pasquetto, Gabriela Sánchez, Matthieu Schapira, Tohar Scheininger, Felix Schoeller, Anibal Sólon Heinsfeld, François Taddei

PLoS Comput. Biol., 2020

2019

Open laboratory notebooks: good for science, good for society, good for scientists.

Matthieu Schapira, Open Lab Notebook Consortium, Rachel J. Harding

F1000Research, 2019

UbiHub: a data hub for the explorers of ubiquitination pathways.

Lihua Liu, David R. Damerell, Leonidas Koukouflis, Yufeng Tong, Brian D. Marsden, Matthieu Schapira

Bioinform., 2019

2014

ChromoHub V2: cancer genomics.

Muhammad A. Shah, Emily Denton, Lihua Liu, Matthieu Schapira

Bioinform., 2014

2013

Strategy to Target the Substrate Binding site of SET Domain Protein Methyltransferases.

Kong T. Nguyen, Fengling Li, Gennadiy Poda, David Smil, Masoud Vedadi, Matthieu Schapira

J. Chem. Inf. Model., 2013

2012

ChromoHub: a data hub for navigators of chromatin-mediated signalling.

Lihua Liu, Xi Ting Zhen, Emily Denton, Brian D. Marsden, Matthieu Schapira

Bioinform., 2012

2011

Normalizing Molecular Docking Rankings using Virtually Generated Decoys.

Izhar Wallach, Navdeep Jaitly, Kong T. Nguyen, Matthieu Schapira, Ryan H. Lilien

J. Chem. Inf. Model., 2011

Structural Chemistry of the Histone Methyltransferases Cofactor Binding Site.

Valérie Campagna-Slater, Man Wai Mok, Kong T. Nguyen, Miklos Feher, Rafael Najmanovich, Matthieu Schapira

J. Chem. Inf. Model., 2011

Druggability of methyl-lysine binding sites.

Calvin Santiago, Kong T. Nguyen, Matthieu Schapira

J. Comput. Aided Mol. Des., 2011

2010

Pharmacophore Screening of the Protein Data Bank for Specific Binding Site Chemistry.

Valérie Campagna-Slater, Andrew G. Arrowsmith, Yong Zhao, Matthieu Schapira

J. Chem. Inf. Model., 2010

Structural genomics of histone tail recognition.

Minghua Wang, Man Wai Mok, Hong Harper, Wen Hwa Lee, Jinrong Min, Stefan Knapp, Udo C. T. Oppermann, Brian D. Marsden, Matthieu Schapira

Bioinform., 2010

2009

Evaluation of Virtual Screening as a Tool for Chemical Genetic Applications.

Valérie Campagna-Slater, Matthieu Schapira

J. Chem. Inf. Model., 2009

2000

Rational discovery of novel nuclear hormone receptor antagonists.

Matthieu Schapira, Bruce M. Raaka, Herbert H. Samuels, Ruben Abagyan

Proc. Natl. Acad. Sci. USA, 2000