Michael Gribskov

According to our database1, Michael Gribskov authored at least 44 papers between 1984 and 2020.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.



In proceedings 
PhD thesis 


On csauthors.net:


Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq.
PLoS Comput. Biol., 2020

MicroRNA and lncRNA Databases and Analysis.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

Identification of Sequence Patterns, Motifs and Domains.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 3, 2019

MiPepid: MicroPeptide identification tool using machine learning.
BMC Bioinform., 2019

IRESpy: an XGBoost model for prediction of internal ribosome entry sites.
BMC Bioinform., 2019

COACT: a query interface language for collaborative databases.
Distributed Parallel Databases, 2018

AUDIT: approving and tracking updates with dependencies in collaborative databases.
Distributed Parallel Databases, 2018

Comprehensive evaluation of de novo transcriptome assembly programs and their effects on differential gene expression analysis.
Bioinform., 2017

DEIsoM: a hierarchical Bayesian model for identifying differentially expressed isoforms using biological replicates.
Bioinform., 2017

AptRank: an adaptive PageRank model for protein function prediction on bi-relational graphs.
Bioinform., 2017

Advancing the Representation of Women in HPC at Purdue University.
Proceedings of the Practice and Experience in Advanced Research Computing 2017: Sustainability, 2017

CellMiner Companion: an interactive web application to explore CellMiner NCI-60 data.
Bioinform., 2016

GenoBase: comprehensive resource database of <i>Escherichia coli</i> K-12.
Nucleic Acids Res., 2015

Differential flux balance analysis of quantitative proteomic data on protein interaction networks.
Proceedings of the 2015 IEEE Global Conference on Signal and Information Processing, 2015

MMC-margin: Identification of maximum frequent subgraphs by metropolis Monte Carlo sampling.
Proceedings of the 2015 IEEE International Conference on Big Data, 2015

Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera).
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Bioinformatics research in the Asia Pacific: a 2007 update.
BMC Bioinform., 2008

Pattern Matching in RNA Structures.
Proceedings of the Bioinformatics Research and Applications, 2008

Wiggle - Predicting Functionally Flexible Regions from Primary Sequence.
PLoS Comput. Biol., 2006

Establishing bioinformatics research in the Asia Pacific.
BMC Bioinform., 2006

The ISCB: Growing and Evolving in Step with Science.
PLoS Comput. Biol., 2005

An Open Forum for Computational Biology.
PLoS Comput. Biol., 2005

A Database Designed to Computationally Aid an Experimental Approach to Alternative Splicing.
Proceedings of the Biocomputing 2004, 2004

Challenges in Data Management for Functional Genomics.
OMICS, 2003

The PlantsP and PlantsT Functional Genomics Databases.
Nucleic Acids Res., 2003

Estimating and Evaluating the Statistics of Gapped Local-Alignment Scores.
J. Comput. Biol., 2003

a program for automatic generation of database interfaces .
Comput. Biol. Chem., 2003

Rival penalized competitive learning (RPCL): a topology-determining algorithm for analyzing gene expression data.
Comput. Biol. Chem., 2003

2HAPI: A Microarray Data Analysis System.
Bioinform., 2003

Homophila: human disease gene cognates in Drosophila.
Nucleic Acids Res., 2002

PlantsP: a functional genomics database for plant phosphorylation.
Nucleic Acids Res., 2001

Use of keyword hierarchies to interpret gene expression patterns.
Bioinform., 2001

ISMB-2000: Bioinformatics enters a new millennium.
Bioinform., 2000

Concerning the accuracy of MAST E-values.
Bioinform., 2000

Methods and Statistics for Combining Motif Match Scores.
J. Comput. Biol., 1998

Combining evidence using p-values: application to sequence homology searches.
Bioinform., 1998

Score Distributions for Simultaneous Matching to Multiple Motifs.
J. Comput. Biol., 1997

Use of Receiver Operating Characteristic (ROC) Analysis to Evaluate Sequence Matching.
Comput. Chem., 1996

The Megaprior Heuristic for Discovering Protein Sequence Patterns.
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996

A Mechanistic View of Proteins and Their Sequences.
Comput. Chem., 1993

The Language Metaphor in Sequence Analysis.
Comput. Chem., 1992

Profile scanning for three-dimensional structural patterns in protein sequences.
Comput. Appl. Biosci., 1988

PEPPLOT, a protein secondary structure analysis program for the UWGCG sequence analysis software package.
Nucleic Acids Res., 1986

The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression.
Nucleic Acids Res., 1984