Isidro Cortes-Ciriano

Orcid: 0000-0002-2036-494X

According to our database1, Isidro Cortes-Ciriano authored at least 29 papers between 2013 and 2023.

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Bibliography

2023
ReConPlot: an R package for the visualization and interpretation of genomic rearrangements.
Bioinform., December, 2023

2021
A semi-supervised learning framework for quantitative structure-activity regression modelling.
Bioinform., 2021

2020
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.
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Nat., 2020

Genomic basis for RNA alterations in cancer.
Nat., 2020

QSAR-derived affinity fingerprints (part 1): fingerprint construction and modeling performance for similarity searching, bioactivity classification and scaffold hopping.
J. Cheminformatics, 2020

QSAR-derived affinity fingerprints (part 2): modeling performance for potency prediction.
J. Cheminformatics, 2020

2019
Reliable Prediction Errors for Deep Neural Networks Using Test-Time Dropout.
J. Chem. Inf. Model., 2019

Deep Confidence: A Computationally Efficient Framework for Calculating Reliable Prediction Errors for Deep Neural Networks.
J. Chem. Inf. Model., 2019

KekuleScope: prediction of cancer cell line sensitivity and compound potency using convolutional neural networks trained on compound images.
J. Cheminformatics, 2019

Concepts and Applications of Conformal Prediction in Computational Drug Discovery.
CoRR, 2019

A decision-theoretic approach to the evaluation of machine learning algorithms in computational drug discovery.
Bioinform., 2019

2018
Conformal Regression for Quantitative Structure-Activity Relationship Modeling - Quantifying Prediction Uncertainty.
J. Chem. Inf. Model., 2018

Discovering Highly Potent Molecules from an Initial Set of Inactives Using Iterative Screening.
J. Chem. Inf. Model., 2018

KekuleScope: improved prediction of cancer cell line sensitivity using convolutional neural networks trained on compound images.
CoRR, 2018

Deep Confidence: A Computationally Efficient Framework for Calculating Reliable Errors for Deep Neural Networks.
CoRR, 2018

2016
Benchmarking the Predictive Power of Ligand Efficiency Indices in QSAR.
J. Chem. Inf. Model., 2016

Bioalerts: a python library for the derivation of structural alerts from bioactivity and toxicity data sets.
J. Cheminformatics, 2016

Improved large-scale prediction of growth inhibition patterns using the NCI60 cancer cell line panel.
Bioinform., 2016

2015
Applications of proteochemometrics (PCM) : from species extrapolation to cell-line sensitivity modelling. (Applications de proteochemometrics : à partir de l'extrapolation des espèces à la modélisation de la sensibilité de la lignée cellulaire).
PhD thesis, 2015

Improved Chemical Structure-Activity Modeling Through Data Augmentation.
J. Chem. Inf. Model., 2015

Comparing the Influence of Simulated Experimental Errors on 12 Machine Learning Algorithms in Bioactivity Modeling Using 12 Diverse Data Sets.
J. Chem. Inf. Model., 2015

Proteochemometric modelling coupled to in silico target prediction: an integrated approach for the simultaneous prediction of polypharmacology and binding affinity/potency of small molecules.
J. Cheminformatics, 2015

Chemically Aware Model Builder (camb): an R package for property and bioactivity modelling of small molecules.
J. Cheminformatics, 2015

Prediction of the potency of mammalian cyclooxygenase inhibitors with ensemble proteochemometric modeling.
J. Cheminformatics, 2015

Identification of binding sites and favorable ligand binding moieties by virtual screening and self-organizing map analysis.
BMC Bioinform., 2015

Applications of proteochemometrics - from species extrapolation to cell line sensitivity modelling.
BMC Bioinform., 2015

2014
Proteochemometric modeling in a Bayesian framework.
J. Cheminformatics, 2014

2013
Benchmarking of protein descriptor sets in proteochemometric modeling (part 2): modeling performance of 13 amino acid descriptor sets.
J. Cheminformatics, 2013

Experimental validation of in silico target predictions on synergistic protein targets.
J. Cheminformatics, 2013


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