Michal Linial

According to our database1, Michal Linial authored at least 58 papers between 1998 and 2016.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of two.



In proceedings 
PhD thesis 


On csauthors.net:


ASAP: a machine learning framework for local protein properties.
Database, 2016

ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus.
PLoS Computational Biology, 2015

ProFET: Feature engineering captures high-level protein functions.
Bioinformatics, 2015

Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus.
Bioinformatics, 2015

ProtoBug: functional families from the complete proteomes of insects.
Database, 2015

Speed Controls in Translating Secretory Proteins in Eukaryotes - an Evolutionary Perspective.
PLoS Computational Biology, 2014

NeuroPID: a classifier of neuropeptide precursors.
Nucleic Acids Research, 2014

The automated function prediction SIG looks back at 2013 and prepares for 2014.
Bioinformatics, 2014

Entropy-driven partitioning of the hierarchical protein space.
Bioinformatics, 2014

NeuroPID: a predictor for identifying neuropeptide precursors from metazoan proteomes.
Bioinformatics, 2014

miRror-Suite: decoding coordinated regulation by microRNAs.
Database, 2014

Mirror2.0: a Platform for Assessing the Joint Action of microRNAs in Cell regulation.
J. Bioinformatics and Computational Biology, 2013

Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex.
BMC Bioinformatics, 2013

Translation Efficiency of Synaptic Proteins and Its Coding Sequence Determinants.
Proceedings of the BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11, 2013

Viral Proteins Acquired from a Host Converge to Simplified Domain Architectures.
PLoS Computational Biology, 2012

ProtoNet 6.0: organizing 10 million protein sequences in a compact hierarchical family tree.
Nucleic Acids Research, 2012

Paving the future: finding suitable ISMB venues.
Bioinformatics, 2012

Susceptibility of the human pathways graphs to fragmentation by small sets of microRNAs.
Bioinformatics, 2012

ARISTO: ontological classification of small molecules by electron ionization-mass spectrometry.
Nucleic Acids Research, 2011

Generative probabilistic models for protein-protein interaction networks - the biclique perspective.
Bioinformatics [ISMB/ECCB], 2011

Recovering key biological constituents through sparse representation of gene expression.
Bioinformatics, 2011

Geometric Interpretation of Gene Expression by Sparse Reconstruction of Transcript Profiles.
Proceedings of the Research in Computational Molecular Biology, 2011

PANDORA: analysis of protein and peptide sets through the hierarchical integration of annotations.
Nucleic Acids Research, 2010

UFFizi: a generic platform for ranking informative features.
BMC Bioinformatics, 2010

A predictor for toxin-like proteins exposes cell modulator candidates within viral genomes.
Bioinformatics, 2010

SPRINT: side-chain prediction inference toolbox for multistate protein design.
Bioinformatics, 2010

Exposing the co-adaptive potential of protein-protein interfaces through computational sequence design.
Bioinformatics, 2010

MiRror: a combinatorial analysis web tool for ensembles of microRNAs and their targets.
Bioinformatics, 2010

ClanTox: a classifier of short animal toxins.
Nucleic Acids Research, 2009

ISMB 2008 Toronto.
PLoS Computational Biology, 2008

Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space.
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

Connect the dots: exposing hidden protein family connections from the entire sequence tree.
Proceedings of the ECCB'08 Proceedings, 2008

08101 Abstracts Collection - Computational Proteomics.
Proceedings of the Computational Proteomics, 02.03. - 07.03.2008, 2008

EVEREST: a collection of evolutionary conserved protein domains.
Nucleic Acids Research, 2007

Unsupervised feature selection under perturbations: meeting the challenges of biological data.
Bioinformatics, 2007

When Less Is More: Improving Classification of Protein Families with a Minimal Set of Global Features.
Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007

Clustering Algorithms Optimizer: A Framework for Large Datasets.
Proceedings of the Bioinformatics Research and Applications, Third International Symposium, 2007

EVEREST: automatic identification and classification of protein domains in all protein sequences.
BMC Bioinformatics, 2006

The Secrets of a Functional Synapse - From a Computational and Experimental Viewpoint.
BMC Bioinformatics, 2006

Novel Unsupervised Feature Filtering of Biological Data.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

ProTarget: automatic prediction of protein structure novelty.
Nucleic Acids Research, 2005

ProtoNet 4.0: A hierarchical classification of one million protein sequences.
Nucleic Acids Research, 2005

ProTeus: identifying signatures in protein termini.
Nucleic Acids Research, 2005

Automatic detection of false annotations via binary property clustering.
BMC Bioinformatics, 2005

Predicting fold novelty based on ProtoNet hierarchical classification.
Bioinformatics, 2005

COMPACT: A Comparative Package for Clustering Assessment.
Proceedings of the Parallel and Distributed Processing and Applications, 2005

Families of membranous proteins can be characterized by the amino acid composition of their transmembrane domains.
Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

A functional hierarchical organization of the protein sequence space.
BMC Bioinformatics, 2004

ProtoNet: hierarchical classification of the protein space.
Nucleic Acids Research, 2003

The Advantage of Functional Prediction Based on Clustering of Yeast Genes and Its Correlation with Non-Sequence Based Classifications.
Journal of Computational Biology, 2002

Selecting targets for structural determination by navigating in a graph of protein families.
Bioinformatics, 2002

Functional Consequences in Metabolic Pathways from Phylogenetic Profiles.
Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002

The metric space of proteins-comparative study of clustering algorithms.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

On the predictive power of sequence similarity in yeast.
Proceedings of the Fifth Annual International Conference on Computational Biology, 2001

ProtoMap: automatic classification of protein sequences and hierarchy of protein families.
Nucleic Acids Research, 2000

Using Bayesian Networks to Analyze Expression Data.
Journal of Computational Biology, 2000

Probabilities for having a new fold on the basis of a map of all protein sequences.
Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000

A Map of the Protein Space: An Automatic Hierarchical Classification of all Protein Sequences.
Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998