Jill P. Mesirov

According to our database, Jill P. Mesirov authored at least 39 papers between 1989 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV).

James T. Robinson, Helga Thorvaldsdóttir, Douglass Turner, Jill P. Mesirov

Bioinform., January, 2023

2019

Session introduction.

Steven E. Brenner, Martha L. Bulyk, Dana C. Crawford, Jill P. Mesirov, Alexander A. Morgan, Predrag Radivojac

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

2018

An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data.

Clarence K. Mah, Thorin Tabor, Jill P. Mesirov

F1000Research, 2018

2017

A multi-tool recipe to identify regions of protein-DNA binding and their influence on associated gene expression.

Daniel E. Carlin, Kassi Kosnicki, Sara Garamszegi, Trey Ideker, Helga Thorvaldsdóttir, Michael Reich, Jill P. Mesirov

F1000Research, 2017

2015

Constellation Map: Downstream visualization and interpretation of gene set enrichment results.

Yan Tan, Felix Wu, Pablo Tamayo, W. Nicholas Haining, Jill P. Mesirov

F1000Research, 2015

Quantitative visualization of alternative exon expression from RNA-seq data.

Yarden Katz, Eric T. Wang, Jacob Silterra, Schraga Schwartz, Bang Wong, Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov, Edoardo M. Airoldi, Christopher B. Burge

Bioinform., 2015

2014

Cytoscape: the network visualization tool for GenomeSpace workflows.

Barry Demchak, Tim Hull, Michael Reich, Ted Liefeld, Michael E. Smoot, Trey Ideker, Jill P. Mesirov

F1000Research, 2014

2013

GenePattern Flow Cytometry Suite.

Josef Spidlen, Aaron Barsky, Karin Breuer, Peter Carr, Marc-Danie Nazaire, Barbara A. Hill, Yu Qian, Ted Liefeld, Michael Reich, Jill P. Mesirov, Peter Wilkinson, Richard H. Scheuermann, Rafick-Pierre Sekaly, Ryan Remy Brinkman

Source Code Biol. Medicine, 2013

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration.

Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov

Briefings Bioinform., 2013

2012

Compression of structured high-throughput sequencing data

Fabien Campagne, Kevin C. Dorff, Nyasha Chambwe, James T. Robinson, Jill P. Mesirov, Thomas D. Wu

CoRR, 2012

AraPath: a knowledgebase for pathway analysis in Arabidopsis.

Liming Lai, Arthur Liberzon, Jason Hennessey, Gaixin Jiang, Jianli Qi, Jill P. Mesirov, Steven X. Ge

Bioinform., 2012

2011

Molecular signatures database (MSigDB) 3.0.

Arthur Liberzon, Aravind Subramanian, Reid Pinchback, Helga Thorvaldsdóttir, Pablo Tamayo, Jill P. Mesirov

Bioinform., 2011

2010

Automated High-Dimensional Flow Cytometric Data Analysis.

Saumyadipta Pyne, Xinli Hu, Kui Wang, Elizabeth Rossin, Tsung-I Lin, Lisa Maier, Clare Baecher-Allan, Geoffrey J. McLachlan, Pablo Tamayo, David Hafler, Philip L. De Jager, Jill P. Mesirov

Proceedings of the Research in Computational Molecular Biology, 2010

2008

ISMB 2008 Toronto.

Michal Linial, Jill P. Mesirov, B. J. Morrison McKay, Burkhard Rost

PLoS Comput. Biol., 2008

2007

Portraits of breast cancer progression.

Gul S. Dalgin, Gabriela Alexe, Daniel Scanfeld, Pablo Tamayo, Jill P. Mesirov, Shridar Ganesan, Charles DeLisi, Gyan Bhanot

BMC Bioinform., 2007

<i>GSEA-P</i>: a desktop application for Gene Set Enrichment Analysis.

Aravind Subramanian, Heidi Kuehn, Joshua Gould, Pablo Tamayo, Jill P. Mesirov

Bioinform., 2007

2006

Comparative gene marker selection suite.

Joshua Gould, Gad Getz, Stefano Monti, Michael Reich, Jill P. Mesirov

Bioinform., 2006

Combo: a whole genome comparative browser.

Reinhard Engels, Tamara Yu, Christopher B. Burge, Jill P. Mesirov, David DeCaprio, James E. Galagan

Bioinform., 2006

2005

Improving genome annotations using phylogenetic profile anomaly detection.

Tarjei S. Mikkelsen, James E. Galagan, Jill P. Mesirov

Bioinform., 2005

GeneCruiser: a web service for the annotation of microarray data.

Ted Liefeld, Michael Reich, Joshua Gould, Peili Zhang, Pablo Tamayo, Jill P. Mesirov

Bioinform., 2005

2004

GeneCluster 2.0: an advanced toolset for bioarray analysis.

Michael Reich, K. Ohm, Michael Angelo, Pablo Tamayo, Jill P. Mesirov

Bioinform., 2004

2003

An Analytical Method for Multiclass Molecular Cancer Classification.

Ryan M. Rifkin, Sayan Mukherjee, Pablo Tamayo, Sridhar Ramaswamy, Chen-Hsiang Yeang, Michael Angelo, Michael Reich, Tomaso A. Poggio, Eric S. Lander, Todd R. Golub, Jill P. Mesirov

SIAM Rev., 2003

Consensus Clustering: A Resampling-Based Method for Class Discovery and Visualization of Gene Expression Microarray Data.

Stefano Monti, Pablo Tamayo, Jill P. Mesirov, Todd R. Golub

Mach. Learn., 2003

Estimating Dataset Size Requirements for Classifying DNA Microarray Data.

Sayan Mukherjee, Pablo Tamayo, Simon Rogers, Ryan M. Rifkin, Anna Engle, Colin Campbell, Todd R. Golub, Jill P. Mesirov

J. Comput. Biol., 2003

2001

Molecular classification of multiple tumor types.

Chen-Hsiang Yeang, Sridhar Ramaswamy, Pablo Tamayo, Sayan Mukherjee, Ryan M. Rifkin, Michael Angelo, Michael Reich, Eric S. Lander, Jill P. Mesirov, Todd R. Golub

Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001

2000

Class prediction and discovery using gene expression data.

Donna K. Slonim, Pablo Tamayo, Jill P. Mesirov, Todd R. Golub, Eric S. Lander

Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000

Human and mouse gene structure: comparative analysis and application to exon prediction.

Serafim Batzoglou, Lior Pachter, Jill P. Mesirov, Bonnie Berger, Eric S. Lander

Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000

Sequencing a genome by walking with clone-end sequences: a mathematical analysis (abstract).

Serafim Batzoglou, Bonnie Berger, Jill P. Mesirov, Eric S. Lander

Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000

1999

Computational biology.

Jill P. Mesirov, Donna K. Slonim

Comput. Sci. Eng., 1999

1995

Data Parallel Quadratic Programming on Box-Constrained Problems.

Mike McKenna, Jill P. Mesirov, Stavros A. Zenios

SIAM J. Optim., 1995

1994

Erratum: Hypercube Algorithms for Direct N-Body Solvers for Different Granularities.

Jean-Philippe Brunet, Alan Edelman, Jill P. Mesirov

SIAM J. Sci. Comput., 1994

1993

Hypercube Algorithms for Direct N-Body Solvers for Different Granularities.

Jean-Philippe Brunet, Jill P. Mesirov, Alan Edelman

SIAM J. Sci. Comput., 1993

1991

Parallel approaches to short range molecular dynamics simulations.

Pablo Tamayo, Jill P. Mesirov, Bruce M. Boghosian

Proceedings of the Proceedings Supercomputing '91, 1991

Computing turbulent flow in complex geometries on a massively parallel processor.

James A. Sethian, Jean-Philippe Brunet, Adam Greenberg, Jill P. Mesirov

Proceedings of the Proceedings Supercomputing '91, 1991

1990

The backpropagation algorithm on grid and hypercube architectures.

Xiru Zhang, Michael McKenna, Jill P. Mesirov, David L. Waltz

Parallel Comput., 1990

An optional hypercube direct <i>N</i>-body solver on the connection machine.

Jean-Philippe Brunet, Alan Edelman, Jill P. Mesirov

Proceedings of the Proceedings Supercomputing '90, New York, NY, USA, November 12-16, 1990, 1990

1989

Study of protein sequence comparison metrics on the connection machine CM-2.

Eric S. Lander, Jill P. Mesirov, Washington Taylor

J. Supercomput., 1989

Protein structure prediction by a data-level parallel algorithm.

Xiru Zhang, David L. Waltz, Jill P. Mesirov

Proceedings of the Proceedings Supercomputing '89, Reno, NV, USA, November 12-17, 1989, 1989

An Efficient Implementation of the Back-propagation Algorithm on the Connection Machine CM-2.

Xiru Zhang, Michael McKenna, Jill P. Mesirov, David L. Waltz

Proceedings of the Advances in Neural Information Processing Systems 2, 1989