Pardis Sabeti

According to our database, Pardis Sabeti authored at least 14 papers between 2013 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2026

PhylaFlow: Hybrid Flow Matching in Billera-Holmes-Vogtmann Tree Space for Phylogenetic Inference.

Yasha Ektefaie, Leo Cui, Shrey Jain, Marinka Zitnik, Pardis Sabeti

CoRR, May, 2026

Best practices when benchmarking CATCH for the design of genome enrichment probes.

Hayden C. Metsky, Katherine J. Siddle, Christian B. Matranga, Pardis C. Sabeti

Bioinform., 2026

2025

Lyra: An Efficient and Expressive Subquadratic Architecture for Modeling Biological Sequences.

Krithik Ramesh, Sameed M. Siddiqui, Albert Gu, Michael Mitzenmacher, Pardis C. Sabeti

CoRR, March, 2025

2024

Polyphonia: detecting inter-sample contamination in viral genomic sequencing data.

Lydia A. Krasilnikova, Christopher Tomkins-Tinch, Alton C. Gayton, Stephen F. Schaffner, Sabrina T. Dobbins, Adrianne Gladden-Young, Katherine J. Siddle, Daniel J. Park, Pardis C. Sabeti

Bioinform., 2024

2022

Analyzing the impact of a real-life outbreak simulator on pandemic mitigation: An epidemiological modeling study.

Ivan Specht, Kian Sani, Bryn C. Loftness, Curtis S. Hoffmann, Gabrielle Gionet, Amy Bronson, John Marshall, Craig Decker, Landen Bailey, Tomi Siyanbade, Molly Kemball, Brett E. Pickett, William P. Hanage, Todd Brown, Pardis C. Sabeti, Andrés Colubri

Patterns, 2022

2017

Virus genomes reveal factors that spread and sustained the Ebola epidemic.

Gytis Dudas, Luiz Max Carvalho, Trevor Bedford, Andrew J. Tatem, Guy Baele, Nuno R. Faria, Daniel J. Park, Jason T. Ladner, Armando Arias, Danny Asogun, Filip Bielejec, Sarah L. Caddy, Matthew Cotten, Jonathan D'Ambrozio, Simon Dellicour, Antonino Di Caro, Joseph W. Diclaro, Sophie Duraffour, Michael J. Elmore, Lawrence S. Fakoli, Ousmane Faye, Merle L. Gilbert, Sahr M. Gevao, Stephen Gire, Adrianne Gladden-Young, Andreas Gnirke, Augustine Goba, Donald S. Grant, Bart L. Haagmans, Julian A. Hiscox, Umaru Jah, Jeffrey R. Kugelman, Di Liu, Jia Lu, Christine M. Malboeuf, Suzanne Mate, David A. Matthews, Christian B. Matranga, Luke W. Meredith, James Qu, Joshua Quick, Suzan D. Pas, My V. T. Phan, Georgios Pollakis, Chantal B. Reusken, Mariano Sanchez-Lockhart, Stephen F. Schaffner, John S. Schieffelin, Rachel S. G. Sealfon, Etienne Simon-Loriere, Saskia L. Smits, Kilian Stoecker, Lucy Thorne, Ekaete Alice Tobin, Mohamed A. Vandi, Simon J. Watson, Kendra West, Shannon Whitmer, Michael R. Wiley, Sarah M. Winnicki, Shirlee Wohl, Roman Wölfel, Nathan L. Yozwiak, Kristian G. Andersen, Sylvia O. Blyden, Fatorma Bolay, Miles W. Carroll, Bernice Dahn, Boubacar Diallo, Pierre Formenty, Christophe Fraser, George F. Gao, Robert F. Garry, Ian Goodfellow, Stephan Günther, Christian T. Happi, Edward C. Holmes, Brima Kargbo, Sakoba Keïta, Paul Kellam, Marion Koopmans, Jens H. Kuhn, Nicholas J. Loman, N'Faly Magassouba, Dhamari Naidoo, Stuart T. Nichol, Tolbert Nyenswah, Gustavo F. Palacios, Oliver G. Pybus, Pardis C. Sabeti, Amadou Sall, Ute Ströher, Isatta Wurie, Marc A. Suchard, Philippe Lemey, Andrew Rambaut

Nat., 2017

2016

Measuring Dependence Powerfully and Equitably.

Yakir A. Reshef, David N. Reshef, Hilary K. Finucane, Pardis C. Sabeti, Michael Mitzenmacher

J. Mach. Learn. Res., 2016

2015

ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus.

Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, Burkhard Rost

PLoS Comput. Biol., 2015

An Empirical Study of Leading Measures of Dependence.

David N. Reshef, Yakir A. Reshef, Pardis C. Sabeti, Michael M. Mitzenmacher

CoRR, 2015

Equitability, interval estimation, and statistical power.

Yakir A. Reshef, David N. Reshef, Pardis C. Sabeti, Michael M. Mitzenmacher

CoRR, 2015

Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus.

Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, Burkhard Rost

Bioinform., 2015

2014

Theoretical Foundations of Equitability and the Maximal Information Coefficient.

Yakir A. Reshef, David N. Reshef, Pardis C. Sabeti, Michael Mitzenmacher

CoRR, 2014

<i>Cosi2: </i> an efficient simulator of exact and approximate coalescent with selection.

Ilya Shlyakhter, Pardis C. Sabeti, Stephen F. Schaffner

Bioinform., 2014

2013

Equitability Analysis of the Maximal Information Coefficient, with Comparisons

David N. Reshef, Yakir Reshef, Michael Mitzenmacher, Pardis Sabeti

CoRR, 2013