Ming Chen

According to our database1, Ming Chen authored at least 49 papers between 2003 and 2020.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.



In proceedings 
PhD thesis 


Online presence:

On csauthors.net:


PmliPred: a method based on hybrid model and fuzzy decision for plant miRNA-lncRNA interaction prediction.
Bioinform., 2020

PncStress: a manually curated database of experimentally validated stress-responsive non-coding RNAs in plants.
Database J. Biol. Databases Curation, 2020

Non-Coding RNAs and their Integrated Networks.
J. Integr. Bioinform., 2019

Integrative Bioinformatics: History and Future.
J. Integr. Bioinform., 2019

Bioinformatics research at BGRS-2018.
BMC Bioinform., 2019

CircFunBase: a database for functional circular RNAs.
Database J. Biol. Databases Curation, 2019

A practical guide for DNase-seq data analysis: from data management to common applications.
Briefings Bioinform., 2019

Versatile interactions and bioinformatics analysis of noncoding RNAs.
Briefings Bioinform., 2019

Big Data Analytics in Medicine and Healthcare.
J. Integr. Bioinform., 2018

PceRBase: a database of plant competing endogenous RNA.
Nucleic Acids Res., 2017

A Generalized Approach for Measuring Relationships Among Genes.
J. Integr. Bioinform., 2017

Digital Biomass Accumulation Using High-Throughput Plant Phenotype Data Analysis.
J. Integr. Bioinform., 2017

Biological Big Bytes: Integrative Analysis of Large Biological Datasets.
J. Integr. Bioinform., 2017

Non-coding RNAs and Their Roles in Stress Response in Plants.
Genom. Proteom. Bioinform., 2017

CircPro: an integrated tool for the identification of circRNAs with protein-coding potential.
Bioinform., 2017

DEF: an automated dead-end filling approach based on quasi-endosymbiosis.
Bioinform., 2017

PlantCircNet: a database for plant circRNA-miRNA-mRNA regulatory networks.
Database J. Biol. Databases Curation, 2017

Circular RNA: an emerging key player in RNA world.
Briefings Bioinform., 2017

DaTo: an atlas of biological databases and tools.
J. Integr. Bioinform., 2016

Toward a next-generation atlas of RNA secondary structure.
Briefings Bioinform., 2016

MTide: an integrated tool for the identification of miRNA-target interaction in plants.
Bioinform., 2015

Hybrid-Dimensional Visualization and Interaction - Integrating 2D and 3D Visualization with Semi-Immersive Navigation Techniques.
Proceedings of the Big Data Visual Analytics, 2015

Open problems in Petri net modeling and simulation of biological systems.
it Inf. Technol., 2014

CompareSVM: supervised, Support Vector Machine (SVM) inference of gene regularity networks.
BMC Bioinform., 2014

Bridging Genomics and Phenomics.
Proceedings of the Approaches in Integrative Bioinformatics - Towards the Virtual Cell, 2014

Integrative Bioinformatics.
Proceedings of the Approaches in Integrative Bioinformatics - Towards the Virtual Cell, 2014

An Integrative Bioinformatics Framework for Genome-scale Multiple Level Network Reconstruction of Rice.
J. Integr. Bioinform., 2013

A reversed framework for the identification of microRNA-target pairs in plants.
Briefings Bioinform., 2013

PlantNATsDB: a comprehensive database of plant natural antisense transcripts.
Nucleic Acids Res., 2012

Computer and Statistical Analysis of Transcription Factor Binding and Chromatin Modifications by ChIP-seq data in Embryonic Stem Cell.
J. Integr. Bioinform., 2012

Petri net models for the semi-automatic construction of large scale biological networks.
Nat. Comput., 2011

PmiRKB: a plant microRNA knowledge base.
Nucleic Acids Res., 2011

Computational Identification of Protein-Protein Interactions in Rice Based on the Predicted Rice Interactome Network.
Genom. Proteom. Bioinform., 2011

PRIN, a predicted rice interactome network.
BMC Bioinform., 2011

MyBioNet: interactively visualize, edit and merge biological networks on the Web.
Bioinform., 2011

Toward microRNA-mediated gene regulatory networks in plants.
Briefings Bioinform., 2011

Modeling of Cell-to-Cell Communication Processes with Petri Nets Using the Example of Quorum Sensing.
Silico Biol., 2010

Functional characterization of plant small RNAs based on next-generation sequencing data.
Comput. Biol. Chem., 2010

Small RNAs in angiosperms: sequence characteristics, distribution and generation.
Bioinform., 2010

Antenna Location Optimization for Circular-Layout Distributed Antenna Systems.
IEICE Trans. Commun., 2009

Threshold-Based OSIC Detection Algorithm for Per-Antenna-Coded TIMO-OFDM Systems.
IEICE Trans. Commun., 2009

Antenna location design for generalized distributed antenna systems.
IEEE Commun. Lett., 2009

In Silico Analysis of Crop Science: Report on the First China-UK Workshop on Chips, Computers and Crops.
Genom. Proteom. Bioinform., 2008

Thresholded Interference Cancellation Algorithm for the LTE Uplink Multiuser MIMO.
Proceedings of the Global Communications Conference, 2008. GLOBECOM 2008, New Orleans, LA, USA, 30 November, 2008

A medical bioinformatics approach for metabolic disorders: Biomedical data prediction, modeling, and systematic analysis.
J. Biomed. Informatics, 2006

<i>BNArray</i>: an R package for constructing gene regulatory networks from microarray data by using Bayesian network.
Bioinform., 2006

STCDB: Signal Transduction Classification Database.
Nucleic Acids Res., 2004

An algorithm for linear metabolic pathway alignment.
Silico Biol., 2004

Quantitative Petri net model of gene regulated metabolic networks in the cell.
Silico Biol., 2003