Monica Chagoyen

According to our database, Monica Chagoyen authored at least 23 papers between 1999 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

MBROLE3: improved functional enrichment of chemical compounds for metabolomics data analysis.

Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen

Nucleic Acids Res., July, 2023

2021

Predicting biological pathways of chemical compounds with a profile-inspired approach.

Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen

BMC Bioinform., 2021

2019

Complex genetic and epigenetic regulation deviates gene expression from a unifying global transcriptional program.

Monica Chagoyen, Juan F. Poyatos

PLoS Comput. Biol., 2019

Bacterial Feature Finder (BaFF) - a system for extracting features overrepresented in sets of prokaryotic organisms.

Javier López-Ibáñez, Laura T. Martín, Monica Chagoyen, Florencio Pazos

Bioinform., 2019

Characteristics and evolution of the ecosystem of software tools supporting research in molecular biology.

Florencio Pazos, Monica Chagoyen

Briefings Bioinform., 2019

2017

Factors affecting interactome-based prediction of human genes associated with clinical signs.

Sara González-Pérez, Florencio Pazos, Monica Chagoyen

BMC Bioinform., 2017

2016

MBROLE 2.0 - functional enrichment of chemical compounds.

Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen

Nucleic Acids Res., 2016

Characterization of clinical signs in the human interactome.

Monica Chagoyen, Florencio Pazos

Bioinform., 2016

Practical analysis of specificity-determining residues in protein families.

Monica Chagoyen, Juan A. García-Martín, Florencio Pazos

Briefings Bioinform., 2016

2013

Tools for the functional interpretation of metabolomic experiments.

Monica Chagoyen, Florencio Pazos

Briefings Bioinform., 2013

2011

MBRole: enrichment analysis of metabolomic data.

Monica Chagoyen, Florencio Pazos

Bioinform., 2011

2010

Quantifying the biological significance of gene ontology biological processes - implications for the analysis of systems-wide data.

Monica Chagoyen, Florencio Pazos

Bioinform., 2010

2009

SENT: semantic features in text.

Miguel Vázquez, Pedro Carmona-Saez, Rubén Nogales-Cadenas, Monica Chagoyen, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano

Nucleic Acids Res., 2009

2008

Assessment of protein set coherence using functional annotations.

Monica Chagoyen, José María Carazo, Alberto D. Pascual-Montano

BMC Bioinform., 2008

Named Entity Recognition and Normalization: A Domain-Specific Language Approach.

Miguel Vázquez, Monica Chagoyen, Alberto D. Pascual-Montano

Proceedings of the 2nd International Workshop on Practical Applications of Computational Biology and Bioinformatics, 2008

CBR-Tagger: a case-based reasoning approach to the gene/protein mention problem.

Mariana L. Neves, Monica Chagoyen, José María Carazo, Alberto D. Pascual-Montano

Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, 2008

2006

bioNMF: a versatile tool for non-negative matrix factorization in biology.

Alberto D. Pascual-Montano, Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, José María Carazo, Roberto D. Pascual-Marqui

BMC Bioinform., 2006

Discovering semantic features in the literature: a foundation for building functional associations.

Monica Chagoyen, Pedro Carmona-Saez, Hagit Shatkay, José María Carazo, Alberto D. Pascual-Montano

BMC Bioinform., 2006

A literature-based similarity metric for biological processes.

Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, José María Carazo, Alberto D. Pascual-Montano

BMC Bioinform., 2006

Integrated analysis of gene expression by association rules discovery.

Pedro Carmona-Saez, Monica Chagoyen, Andrés Rodríguez Moreno, Oswaldo Trelles, José María Carazo, Alberto D. Pascual-Montano

BMC Bioinform., 2006

2004

Designing and executing scientific workflows with a programmable integrator.

Monica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, José María Carazo, Amarnath Gupta

Bioinform., 2004

2003

A Semantic Mediation Approach for Problems in Computational Molecular Biology.

Monica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, Simone Santini, Bertram Ludäscher, José María Carazo, Amarnath Gupta

Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

1999

Organising multi-dimensional biological image information: the BioImage Database.

José María Carazo, Ernst H. K. Stelzer, A. Engel, I. Fita, C. Henn, J. Machtynger, P. McNeil, David M. Shotton, Monica Chagoyen, Pedro A. de Alarcón, R. Fritsch, J. B. Heymann, Susana G. Kalko, J. J. Pittet, Patricia Rodriguez-Tomé, Thomas Boudier

Nucleic Acids Res., 1999