Pedro Carmona-Saez

According to our database, Pedro Carmona-Saez authored at least 25 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Response to the letter 'testing the effectiveness of MyPROSLE in classifying patients with lupus nephritis'.

Daniel Toro-Domínguez, Jordi Martorell-Marugan, Manuel Martínez-Bueno, Raúl López-Domínguez, Elena Carnero-Montoro, Guillermo Barturen, Daniel Goldman, Michelle Petri, Pedro Carmona-Saez, Marta E. Alarcón-Riquelme

Briefings Bioinform., November, 2023

Differential diagnosis of systemic lupus erythematosus and Sjögren's syndrome using machine learning and multi-omics data.

Jordi Martorell-Marugan, Marco Chierici, Giuseppe Jurman, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez

Comput. Biol. Medicine, 2023

2022

sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms.

Ernesto Aparicio-Puerta, Cristina Gómez-Martín, Stavros Giannoukakos, José María Medina, Chantal Scheepbouwer, Adrián García-Moreno, Pedro Carmona-Saez, Bastian Fromm, Michiel Pegtel, Andreas Keller, Juan Antonio Marchal, Michael Hackenberg

Nucleic Acids Res., 2022

Scoring personalized molecular portraits identify Systemic Lupus Erythematosus subtypes and predict individualized drug responses, symptomatology and disease progression.

Daniel Toro-Domínguez, Jordi Martorell-Marugan, Manuel Martínez-Bueno, Raúl López-Domínguez, Elena Carnero-Montoro, Guillermo Barturen, Daniel Goldman, Michelle Petri, Pedro Carmona-Saez, Marta E. Alarcón-Riquelme

Briefings Bioinform., 2022

2021

A comprehensive database for integrated analysis of omics data in autoimmune diseases.

Jordi Martorell-Marugan, Raúl López-Domínguez, Adrián García-Moreno, Daniel Toro-Domínguez, Juan Antonio Villatoro-García, Guillermo Barturen, Adoración Martín-Gómez, Kevin Troulé, Gonzalo Gómez-López, Fátima Al-Shahrour, Víctor González-Rumayor, María Peña-Chilet, Joaquín Dopazo, Julio Sáez-Rodríguez, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez

BMC Bioinform., 2021

DREIMT: a drug repositioning database and prioritization tool for immunomodulation.

Kevin Troulé, Hugo López-Fernández, Santiago García-Martín, Miguel Reboiro-Jato, Carlos Carretero-Puche, Jordi Martorell-Marugan, Guillermo Martín-Serrano, Pedro Carmona-Saez, Daniel Glez-Peña, Fátima Al-Shahrour, Gonzalo Gómez-López

Bioinform., 2021

A survey of gene expression meta-analysis: methods and applications.

Daniel Toro-Domínguez, Juan Antonio Villatoro-García, Jordi Martorell-Marugan, Yolanda Román-Montoya, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez

Briefings Bioinform., 2021

2019

ImaGEO: integrative gene expression meta-analysis from GEO database.

Daniel Toro-Domínguez, Jordi Martorell-Marugan, Raúl López-Domínguez, Adrián García-Moreno, Víctor González-Rumayor, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez

Bioinform., 2019

mCSEA: detecting subtle differentially methylated regions.

Jordi Martorell-Marugan, Víctor González-Rumayor, Pedro Carmona-Saez

Bioinform., 2019

2017

MetaGenyo: a web tool for meta-analysis of genetic association studies.

Jordi Martorell-Marugan, Daniel Toro-Domínguez, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez

BMC Bioinform., 2017

Metagene projection characterizes GEN2.2 and CAL-1 as relevant human plasmacytoid dendritic cell models.

Pedro Carmona-Saez, Nieves Varela, María José Luque, Daniel Toro-Domínguez, Jordi Martorell-Marugan, Marta E. Alarcón-Riquelme, Concepción Marañón

Bioinform., 2017

2011

Finding closed frequent item sets by intersecting transactions.

Christian Borgelt, Xiaoyuan Yang, Rubén Nogales-Cadenas, Pedro Carmona-Saez, Alberto D. Pascual-Montano

Proceedings of the EDBT 2011, 2011

2010

MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures.

Miguel Vázquez, Rubén Nogales-Cadenas, Javier Arroyo, Pedro Botías, Raul García, José María Carazo, Francisco Tirado, Alberto D. Pascual-Montano, Pedro Carmona-Saez

Nucleic Acids Res., 2010

Rbbt: A Framework for Fast Bioinformatics Development with Ruby.

Miguel Vázquez, Rubén Nogales, Pedro Carmona-Saez, Alberto Pascual, Juan Pavón

Proceedings of the Advances in Bioinformatics, 2010

2009

SENT: semantic features in text.

Miguel Vázquez, Pedro Carmona-Saez, Rubén Nogales-Cadenas, Monica Chagoyen, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano

Nucleic Acids Res., 2009

GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information.

Rubén Nogales-Cadenas, Pedro Carmona-Saez, Miguel Vázquez, Cesar Vicente, Xiaoyuan Yang, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano

Nucleic Acids Res., 2009

2008

bioNMF: a web-based tool for nonnegative matrix factorization in biology.

Edgardo Mejía-Roa, Pedro Carmona-Saez, Rubén Nogales, Cesar Vicente, Miguel Vázquez, X. Y. Yang, Carlos García, Francisco Tirado, Alberto D. Pascual-Montano

Nucleic Acids Res., 2008

ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data.

Federico Abascal, Pedro Carmona-Saez, José María Carazo, Alberto D. Pascual-Montano

Bioinform., 2008

2006

bioNMF: a versatile tool for non-negative matrix factorization in biology.

Alberto D. Pascual-Montano, Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, José María Carazo, Roberto D. Pascual-Marqui

BMC Bioinform., 2006

Discovering semantic features in the literature: a foundation for building functional associations.

Monica Chagoyen, Pedro Carmona-Saez, Hagit Shatkay, José María Carazo, Alberto D. Pascual-Montano

BMC Bioinform., 2006

A literature-based similarity metric for biological processes.

Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, José María Carazo, Alberto D. Pascual-Montano

BMC Bioinform., 2006

Biclustering of gene expression data by non-smooth non-negative matrix factorization.

Pedro Carmona-Saez, Roberto D. Pascual-Marqui, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano

BMC Bioinform., 2006

Integrated analysis of gene expression by association rules discovery.

Pedro Carmona-Saez, Monica Chagoyen, Andrés Rodríguez Moreno, Oswaldo Trelles, José María Carazo, Alberto D. Pascual-Montano

BMC Bioinform., 2006

2005

Knowledge Discovery in the Identification of Differentially Expressed Genes in Tumoricidal Macrophage.

A. Fazel Famili, Ziying Liu, Pedro Carmona-Saez, Alaka Mullick

Proceedings of the Advances in Intelligent Data Analysis VI, 2005

Two-way clustering of gene expression profiles by sparse matrix factorization.

Alberto D. Pascual-Montano, Francisco Tirado, Pedro Carmona-Saez, José María Carazo, Roberto D. Pascual-Marqui

Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005