Nicolas Palopoli

According to our database, Nicolas Palopoli authored at least 16 papers between 2012 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

CaviDB: a database of cavities and their features in the structural and conformational space of proteins.

Ana Julia Velez Rueda, Franco Leonardo Bulgarelli, Nicolas Palopoli, Gustavo D. Parisi

Database J. Biol. Databases Curation, 2023

2022

CoDNaS-Q: a database of conformational diversity of the native state of proteins with quaternary structure.

Nahuel Escobedo, Ronaldo Romario Tunque Cahui, Gastón Caruso, Emilio Garcia-Rios, Layla Hirsh, Alexander Miguel Monzon, Gustavo D. Parisi, Nicolas Palopoli

Bioinform., October, 2022

DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation.

Federica Quaglia, Bálint Mészáros, Edoardo Salladini, András Hatos, Rita Pancsa, Lucía B. Chemes, Mátyás Pajkos, Tamas Lazar, Samuel Peña-Díaz, Jaime Santos, Veronika Ács, Nazanin Farahi, Erzsébet Fichó, Maria Cristina Aspromonte, Claudio Bassot, Anastasia Chasapi, Norman E. Davey, Radoslav Davidovic, Laszlo Dobson, Arne Elofsson, Gábor Erdös, Pascale Gaudet, Michelle G. Giglio, Juliana Glavina, Javier Iserte, Valentín Iglesias, Zsófia L. Kálmán, Matteo Lambrughi, Emanuela Leonardi, Sonia Longhi, Sandra Macedo-Ribeiro, Emiliano Maiani, Julia Marchetti, Cristina Marino Buslje, Attila Meszaros, Alexander Miguel Monzon, Giovanni Minervini, Suvarna Nadendla, Juliet F. Nilsson, Marián Novotný, Christos A. Ouzounis, Nicolas Palopoli, Elena Papaleo, Pedro J. Barbosa Pereira, Gabriele Pozzati, Vasilis J. Promponas, Jordi Pujols, Alma Carolina Sanchez Rocha, Martin Salas, Luciana Rodriguez Sawicki, Éva Schád, Aditi Shenoy, Tamás Szaniszló, Konstantinos D. Tsirigos, Nevena Veljkovic, Gustavo D. Parisi, Salvador Ventura, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan

Nucleic Acids Res., 2022

Impact of protein conformational diversity on AlphaFold predictions.

Tadeo E. Saldaño, Nahuel Escobedo, Julia Marchetti, Diego Javier Zea, Juan Mac Donagh, Ana Julia Velez Rueda, Eduardo Gonik, Agustina García Melani, Julieta Novomisky Nechcoff, Martín N. Salas, Tomás Peters, Nicolás Demitroff, Sebastian Fernandez Alberti, Nicolas Palopoli, María Silvina Fornasari, Gustavo D. Parisi

Bioinform., 2022

CoDNaS-RNA: a database of conformational diversity in the native state of RNA.

Martin Gonzalez Buitron, Ronaldo Romario Tunque Cahui, Emilio Garcia-Rios, Layla Hirsh, Gustavo D. Parisi, María Silvina Fornasari, Nicolas Palopoli

Bioinform., 2022

2020

ELM - the eukaryotic linear motif resource in 2020.

Manjeet Kumar, Marc Gouw, Sushama Michael, Hugo Sámano-Sánchez, Rita Pancsa, Juliana Glavina, Athina Diakogianni, Jesús Alvarado Valverde, Dayana Bukirova, Jelena Calyseva, Nicolas Palopoli, Norman E. Davey, Lucía B. Chemes

Nucleic Acids Res., 2020

DisProt: intrinsic protein disorder annotation in 2020.

András Hatos, Borbála Hajdu-Soltész, Alexander Miguel Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykaç Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi, Lucía B. Chemes, Norman E. Davey, Radoslav Davidovic, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy, Tamás Horváth, Valentin Iglesias, Andrey V. Kajava, Orsolya P. Kovács, John Lamb, Matteo Lambrughi, Tamas Lazar, Jeremy Y. Leclercq, Emanuela Leonardi, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Emiliano Maiani, José A. Manso, Cristina Marino Buslje, Elizabeth Martínez-Pérez, Bálint Mészáros, Ivan Micetic, Giovanni Minervini, Nikoletta Murvai, Marco Necci, Christos A. Ouzounis, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo, Gustavo D. Parisi, Emilie Pasche, Pedro J. Barbosa Pereira, Vasilis J. Promponas, Jordi Pujols, Federica Quaglia, Patrick Ruch, Marco Salvatore, Éva Schád, Beáta Szabó, Tamás Szaniszló, Stella Tamana, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan

Nucleic Acids Res., 2020

The articles.ELM resource: simplifying access to protein linear motif literature by annotation, text-mining and classification.

Nicolas Palopoli, Javier Iserte, Lucía B. Chemes, Cristina Marino Buslje, Gustavo D. Parisi, Toby J. Gibson, Norman E. Davey

Database J. Biol. Databases Curation, 2020

2019

Assessment of Structure Quality (RNA and Protein).

Nicolas Palopoli

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 3, 2019

Bioinformatics calls the school: Use of smartphones to introduce Python for bioinformatics in high schools.

Ana Julia Velez Rueda, Guillermo I. Benítez, Julia Marchetti, Marcia Anahi Hasenahuer, María Silvina Fornasari, Nicolas Palopoli, Gustavo D. Parisi

PLoS Comput. Biol., 2019

ProtMiscuity: a database of promiscuous proteins.

Ana Julia Velez Rueda, Nicolas Palopoli, Matías Zacarías, Leandro Matías Sommese, Gustavo D. Parisi

Database J. Biol. Databases Curation, 2019

2018

The eukaryotic linear motif resource - 2018 update.

Marc Gouw, Sushama Michael, Hugo Sámano-Sánchez, Manjeet Kumar, András Zeke, Benjamin Lang, Benoit Bely, Lucía B. Chemes, Norman E. Davey, Ziqi Deng, Francesca Diella, Clara-Marie Gürth, Ann-Kathrin Huber, Stefan Kleinsorg, Lara S. Schlegel, Nicolas Palopoli, Kim Van Roey, Brigitte Altenberg, Attila Reményi, Holger Dinkel, Toby J. Gibson

Nucleic Acids Res., 2018

2015

SLiMScape 3.x: a Cytoscape 3 app for discovery of Short Linear Motifs in protein interaction networks.

Emily Olorin, Kevin T. O'Brien, Nicolas Palopoli, Åsa Pérez-Bercoff, Denis C. Shields, Richard J. Edwards

F1000Research, 2015

QSLiMFinder: improved short linear motif prediction using specific query protein data.

Nicolas Palopoli, Kieren T. Lythgow, Richard J. Edwards

Bioinform., 2015

2013

BeEP Server: using evolutionary information for quality assessment of protein structure models.

Nicolas Palopoli, Esteban Lanzarotti, Gustavo D. Parisi

Nucleic Acids Res., 2013

2012

MetaBase - the wiki-database of biological databases.

Dan M. Bolser, Pierre-Yves Chibon, Nicolas Palopoli, Sungsam Gong, Daniel Jacob, Victoria Dominguez Del Angel, Daniel Swan, Sebastian Bassi, Virginia González, Prashanth Suravajhala, Seungwoo Hwang, Paolo Romano, Rob Edwards, Bryan Bishop, John Eargle, Timur Shtatland, Nicholas J. Provart, Dave Clements, Daniel P. Renfro, Daeui Park, Jong Bhak

Nucleic Acids Res., 2012