Patrick Ruch
Orcid: 0000-0002-3374-2962
According to our database1,
Patrick Ruch
authored at least 151 papers
between 1999 and 2023.
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Bibliography
2023
Frontiers Digit. Health, May, 2023
Bioinform., January, 2023
Database J. Biol. Databases Curation, 2023
2022
Analyzing the Information Content of Text-Based Files in Supplementary Materials of Biomedical Literature.
Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022
Designing an Optimal Expansion Method to Improve the Recall of a Genomic Variant Curation-Support Service.
Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022
Classification of Oncology Treatment Responses from French Radiology Reports with Supervised Machine Learning.
Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022
Classification of oncology treatment responses from radiology reports with supervised machine learning.
Proceedings of the AMIA 2022, 2022
2021
Ensemble of Deep Masked Language Models for Effective Named Entity Recognition in Health and Life Science Corpora.
Frontiers Res. Metrics Anal., 2021
Proceedings of the Thirtieth Text REtrieval Conference, 2021
Proceedings of the 17th International Conference on Digital Preservation, 2021
2020
SIB Literature Services: RESTful customizable search engines in biomedical literature, enriched with automatically mapped biomedical concepts.
Nucleic Acids Res., 2020
Database J. Biol. Databases Curation, 2020
Proceedings of the Twenty-Ninth Text REtrieval Conference, 2020
Proceedings of the Twenty-Ninth Text REtrieval Conference, 2020
Proceedings of the Actes de la 6e conférence conjointe Journées d'Études sur la Parole (JEP, 2020
Machine Learning for Automatic Encoding of French Electronic Medical Records: Is More Data Better?
Proceedings of the Digital Personalized Health and Medicine - Proceedings of MIE 2020, Medical Informatics Europe, Geneva, Switzerland, April 28, 2020
Proceedings of the Digital Personalized Health and Medicine - Proceedings of MIE 2020, Medical Informatics Europe, Geneva, Switzerland, April 28, 2020
An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents.
Proceedings of the Working Notes of CLEF 2020, 2020
Named Entity Recognition in Chemical Patents using Ensemble of Contextual Language Models.
Proceedings of the Working Notes of CLEF 2020, 2020
BiTeM at WNUT 2020 Shared Task-1: Named Entity Recognition over Wet Lab Protocols using an Ensemble of Contextual Language Models.
Proceedings of the Sixth Workshop on Noisy User-generated Text, 2020
2019
Proceedings of the Twenty-Eighth Text REtrieval Conference, 2019
Designing retrieval models to contrast precision-driven ad hoc search vs. recall-driven treatment extraction in Precision Medicine.
Proceedings of the Twenty-Eighth Text REtrieval Conference, 2019
A Data-Driven Approach for Measuring the Severity of the Signs of Depression using Reddit Posts.
Proceedings of the Working Notes of CLEF 2019, 2019
A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm in Reddit Posts.
Proceedings of the Working Notes of CLEF 2019, 2019
Retrieving the Evidence of a Free Text Annotation in a Scientific Article: A Data Free Approach.
Proceedings of the Computational Linguistics and Intelligent Text Processing, 2019
2018
Database J. Biol. Databases Curation, 2018
Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt.
Database J. Biol. Databases Curation, 2018
Proceedings of the Working Notes of CLEF 2018, 2018
2017
Global picture of OAI-PMH repositories through the analysis of 6 key open archive meta-catalogs.
CoRR, 2017
Improving average ranking precision in user searches for biomedical research datasets.
Database J. Biol. Databases Curation, 2017
Database J. Biol. Databases Curation, 2017
Customizing a Variant Annotation-Support Tool: an Inquiry into Probability Ranking Principles for TREC Precision Medicine.
Proceedings of The Twenty-Sixth Text REtrieval Conference, 2017
2016
neXtA<sub>5</sub>: accelerating annotation of articles via automated approaches in neXtProt.
Database J. Biol. Databases Curation, 2016
Tools to Retrieve Reliable Health Information on the Internet - Improvements of the Automated Detection of HONcode Criteria for Mass Health Online Content.
Proceedings of the European Project Space on Intelligent Technologies, 2016
BiTeM at CLEF eHealth Evaluation Lab 2016 Task 2: Multilingual Information Extraction.
Proceedings of the Working Notes of CLEF 2016, 2016
Effect of the Named Entity Recognition and Sliding Window on the HONcode Automated Detection of HONcode Criteria for Mass Health Online Content.
Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2016), 2016
2015
Database J. Biol. Databases Curation, 2015
Exploiting incoming and outgoing citations for improving Information Retrieval in the TREC 2015 Clinical Decision Support Track.
Proceedings of The Twenty-Fourth Text REtrieval Conference, 2015
Proceedings of the Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2015
2014
Development and tuning of an original search engine for patent libraries in medicinal chemistry.
BMC Bioinform., 2014
Database J. Biol. Databases Curation, 2014
Closing the loop: from paper to protein annotation using supervised Gene Ontology classification.
Database J. Biol. Databases Curation, 2014
Full-texts representation with Medical Subject Headings, and co-citations network rerank- ing strategies for TREC 2014 Clinical Decision Support Track.
Proceedings of The Twenty-Third Text REtrieval Conference, 2014
Electronic Processing of Informed Consents in a Global Pharmaceutical Company Environment.
Proceedings of the e-Health - For Continuity of Care - Proceedings of MIE2014, the 25th European Medical Informatics Conference, Istanbul, Turkey, August 31, 2014
Proceedings of the Working Notes for CLEF 2014 Conference, 2014
2013
Application of text-mining for updating protein post-translational modification annotation in UniProtKB.
BMC Bioinform., 2013
Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases.
Database J. Biol. Databases Curation, 2013
Proceedings of the MEDINFO 2013, 2013
Khresmoi - Multilingual Semantic Search of Medical Text and Images.
Proceedings of the MEDINFO 2013, 2013
Utilization of Ontology Look-Up Services in Information Retrieval for Biomedical Literature.
Proceedings of the Data and Knowledge for Medical Decision Support, 2013
Using a Question-Answering Approach in Machine Reading Task of Biomedical Texts about the Alzheimer Disease.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013
2012
Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database.
Database J. Biol. Databases Curation, 2012
Classification and Prioritization of Biomedical Literature for the Comparative Toxicogenomics Database.
Proceedings of the Quality of Life through Quality of Information, 2012
Proceedings of the Quality of Life through Quality of Information, 2012
Proceedings of the Large Scale Projects in eHealth, 2012
Proceedings of the Large Scale Projects in eHealth, 2012
Proceedings of the CLEF 2012 Evaluation Labs and Workshop, 2012
2011
Proceedings of The Twentieth Text REtrieval Conference, 2011
Proceedings of The Twentieth Text REtrieval Conference, 2011
Proceedings of the User Centered Networked Health Care - Proceedings of MIE 2011, 2011
Proceedings of the User Centered Networked Health Care - Proceedings of MIE 2011, 2011
2010
BiTeM site Report for TREC Chemistry 2010: Impact of Citations Feeback for Patent Prior Art Search and Chemical Compounds Expansion for Ad Hoc Retrieval.
Proceedings of The Nineteenth Text REtrieval Conference, 2010
Proceedings of the 8th NTCIR Workshop Meeting on Evaluation of Information Access Technologies: Information Retrieval, 2010
Proceedings of the Web Sémantique Médical workshop, 2010
Proceedings of the CLEF 2010 LABs and Workshops, 2010
2009
Comparing a rule-based versus statistical system for automatic categorization of MEDLINE documents according to biomedical specialty.
J. Assoc. Inf. Sci. Technol., 2009
Proceedings of The Eighteenth Text REtrieval Conference, 2009
Proceedings of the Medical Informatics in a United and Healthy Europe - Proceedings of MIE 2009, The XXIInd International Congress of the European Federation for Medical Informatics, Sarajevo, Bosnia and Herzegovina, August 30, 2009
Proceedings of the Medical Informatics in a United and Healthy Europe - Proceedings of MIE 2009, The XXIInd International Congress of the European Federation for Medical Informatics, Sarajevo, Bosnia and Herzegovina, August 30, 2009
Exploring a Wide Range of Simple Pre and Post Processing Strategies for Patent Searching in CLEF IP 2009.
Proceedings of the Working Notes for CLEF 2009 Workshop co-located with the 13th European Conference on Digital Libraries (ECDL 2009) , Corfù, Greece, September 30, 2009
Taking Benefit of Query and Document Expansion using MeSH Descriptors in Medical ImageCLEF 2009.
Proceedings of the Working Notes for CLEF 2009 Workshop co-located with the 13th European Conference on Digital Libraries (ECDL 2009) , Corfù, Greece, September 30, 2009
Simple Pre and Post Processing Strategies for Patent Searching in CLEF Intellectual Property Track 2009.
Proceedings of the Multilingual Information Access Evaluation I. Text Retrieval Experiments, 2009
Proceedings of the AMIA 2009, 2009
2008
BMC Medical Informatics Decis. Mak., 2008
BMC Bioinform., 2008
Gene Ontology density estimation and discourse analysis for automatic GeneRiF extraction.
BMC Bioinform., 2008
Proceedings of the Working Notes for CLEF 2008 Workshop co-located with the 12th European Conference on Digital Libraries (ECDL 2008) , 2008
Query and Document Expansion with Medical Subject Headings Terms at Medical Imageclef 2008.
Proceedings of the Evaluating Systems for Multilingual and Multimodal Information Access, 2008
First Participation of University and Hospitals of Geneva to Domain-Specific Track in CLEF 2008.
Proceedings of the Working Notes for CLEF 2008 Workshop co-located with the 12th European Conference on Digital Libraries (ECDL 2008) , 2008
From Episodes of Care to Diagnosis Codes: Automatic Text Categorization for Medico-Economic Encoding.
Proceedings of the AMIA 2008, 2008
2007
Int. J. Medical Informatics, 2007
Proceedings of The Sixteenth Text REtrieval Conference, 2007
Proceedings of The Sixteenth Text REtrieval Conference, 2007
Proceedings of the MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics, 2007
Design of a Decentralized Reusable Research Database Architecture to Support Data Acquisition in Large Research Projects.
Proceedings of the MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics, 2007
Proceedings of the MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics, 2007
Proceedings of the MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics, 2007
Recherche d'information et analyse bibliographique appliquées à la mise à jour automatique de Swiss-Prot.
Proceedings of the COnférence en Recherche d'Infomations et Applications, 2007
Proceedings of the Working Notes for CLEF 2007 Workshop co-located with the 11th European Conference on Digital Libraries (ECDL 2007), 2007
Proceedings of the Advances in Multilingual and Multimodal Information Retrieval, 2007
Unsupervised Documents Categorization Using New Threshold-Sensitive Weighting Technique.
Proceedings of the Artificial Intelligence in Medicine, 2007
2006
Model Formulation: Advancing Biomedical Image Retrieval: Development and Analysis of a Test Collection.
J. Am. Medical Informatics Assoc., 2006
Using argumentation to retrieve articles with similar citations: An inquiry into improving related articles search in the MEDLINE digital library.
Int. J. Medical Informatics, 2006
Int. J. Medical Informatics, 2006
Int. J. Medical Informatics, 2006
Int. J. Medical Informatics, 2006
Bioinform., 2006
Proceedings of the Fifteenth Text REtrieval Conference, 2006
Finding Relevant Passages in Scientific Articles: Fusion of Automatic Approaches vs. an Interactive Team Effort.
Proceedings of the Fifteenth Text REtrieval Conference, 2006
Dépister efficacement de l'information dans une banque documentaire : L'exemple de MEDLINE.
Proceedings of the Actes du XXIVème Congrès INFORSID, Hammamet, Tunisie, 31 mai, 2006
Query and Document Translation by Automatic Text Categorization: A Simple Approach to Establish a Strong Textual Baseline for ImageCLEFmed 2006.
Proceedings of the Working Notes for CLEF 2006 Workshop co-located with the 10th European Conference on Digital Libraries (ECDL 2006), 2006
Proceedings of the Evaluation of Multilingual and Multi-modal Information Retrieval, 2006
Argumentative Feedback: A Linguistically-Motivated Term Expansion for Information Retrieval.
Proceedings of the ACL 2006, 2006
2005
Data-poor categorization and passage retrieval for Gene Ontology Annotation in Swiss-Prot.
BMC Bioinform., 2005
Proceedings of the Fourteenth Text REtrieval Conference, 2005
Fusion of Knowledge-Intensive and Statistical Approaches for Retrieving and Annotating Textual Genomics Documents.
Proceedings of the Fourteenth Text REtrieval Conference, 2005
Evaluation of Stemming, Query Expansion and Manual Indexing Approaches for the Genomic Task.
Proceedings of the Fourteenth Text REtrieval Conference, 2005
Proceedings of the Connecting Medical Informatics and Bio-Informatics - Proceedings of MIE 2005, 2005
Proceedings of the Eighteenth International Florida Artificial Intelligence Research Society Conference, 2005
Proceedings of the Advances in Information Retrieval, 2005
Proceedings of the Working Notes for CLEF 2005 Workshop co-located with the 9th European Conference on Digital Libraries (ECDL 2005), 2005
Proceedings of the Accessing Multilingual Information Repositories, 2005
Proceedings of the Artificial Intelligence in Medicine, 2005
2004
Proceedings of the Thirteenth Text REtrieval Conference, 2004
Proceedings of the Fourth International Conference on Language Resources and Evaluation, 2004
ImageCLEF 2004: Combining Image and Multi-lingual Search for Medical Image Retrieval.
Proceedings of the Multilingual Information Access for Text, 2004
Report on the CLEF Experiment: Combining Image and Multilingual Search for Medical Image Retrieval.
Proceedings of the Working Notes for CLEF 2004 Workshop co-located with the 8th European Conference on Digital Libraries (ECDL 2004), 2004
Report on the ImageCLEF Experiment: How to Visually Retrieve Images from the St. Andrews Collection using GIFT.
Proceedings of the Working Notes for CLEF 2004 Workshop co-located with the 8th European Conference on Digital Libraries (ECDL 2004), 2004
Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications, 2004
2003
Using lexical disambiguation and named-entity recognition to improve spelling correction in the electronic patient record.
Artif. Intell. Medicine, 2003
Proceedings of The Twelfth Text REtrieval Conference, 2003
Proceedings of the New Navigators: from Professionals to Patients, 2003
Proceedings of the New Navigators: from Professionals to Patients, 2003
Proceedings of the Artificial Intelligence in Medicine, 2003
2002
Evaluating and reducing the effect of data corruption when applying bag of words approaches to medical records.
Int. J. Medical Informatics, 2002
Int. J. Medical Informatics, 2002
Information retrieval and spelling correction: an inquiry into lexical disambiguation.
Proceedings of the 2002 ACM Symposium on Applied Computing (SAC), 2002
Using Contextual Spelling Correction to Improve Retrieval Effectiveness in Degraded Text Collections.
Proceedings of the 19th International Conference on Computational Linguistics, 2002
2001
Toward filling the gap between interactive and fully-automatic spelling correction using the linguistic context.
Proceedings of the IEEE International Conference on Systems, 2001
Comparing General and Medical Texts for Information Retrieval Based on Natural Language Processing: An Inquiry into Lexical Disambiguation.
Proceedings of the MEDINFO 2001, 2001
Proceedings of the MEDINFO 2001, 2001
Looking back or looking all around: comparing two spell checking strategies for documents edition in an electronic patient record.
Proceedings of the AMIA 2001, 2001
Proceedings of the AMIA 2001, 2001
Using Part-of-Speech and Word-Sense Disambiguation for Boosting String-Edit Distance Spelling Correction.
Proceedings of the Artificial Intelligence Medicine, 2001
2000
Minimal Commitment and Full Lexical Disambiguation: Balancing Rules and Hidden Markov Models.
Proceedings of the Fourth Conference on Computational Natural Language Learning, 2000
Proceedings of the AMIA 2000, 2000
Semantic handling of medical compound words through sound analysis and generation processes.
Proceedings of the AMIA 2000, 2000
1999
Proceedings of the AMIA 1999, 1999
Proceedings of the AMIA 1999, 1999
Proceedings of the AMIA 1999, 1999