Niels Grabe

According to our database, Niels Grabe authored at least 24 papers between 1998 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Segmentation of diagnostic tissue compartments on whole slide images with renal thrombotic microangiopathies (TMAs).

Huy Q. Vo, Pietro Antonio Cicalese, Surya Seshan, Syed Asad Rizvi, Aneesh Vathul, Gloria Bueno, Aníbal Pedraza Dorado, Niels Grabe, Katharina Stolle, Francesco Pesce, Joris J. T. H. Roelofs, Jesper Kers, Vitoantonio Bevilacqua, Nicola Altini, Bernd Schröppel, Dario Roccatello, Antonella Barreca, Savino Sciascia, Chandra Mohan, Hien Van Nguyen, Jan U. Becker

CoRR, 2023

2018

Tumor Cell Load and Heterogeneity Estimation From Diffusion-Weighted MRI Calibrated With Histological Data: an Example From Lung Cancer.

Yi Yin, Oliver Sedlaczek, Benedikt Müller, Arne Warth, Margarita Gonzalez-Vallinas, Bernd Lahrmann, Niels Grabe, Hans-Ulrich Kauczor, Kai Breuhahn, Irene E. Vignon-Clementel, Dirk Drasdo

IEEE Trans. Medical Imaging, 2018

2016

Patch-Based Nonlinear Image Registration for Gigapixel Whole Slide Images.

Johannes Lotz, Janine Olesch, Benedikt Müller, Thomas Polzin, P. Galuschka, J. M. Lotz, Stefan Heldmann, Hendrik Laue, Margarita Gonzalez-Vallinas, Arne Warth, Bernd Lahrmann, Niels Grabe, Oliver Sedlaczek, Kai Breuhahn, Jan Modersitzki

IEEE Trans. Biomed. Eng., 2016

Automated robust registration of grossly misregistered whole-slide images with varying stains.

Geert Litjens, Kai Safferling, Niels Grabe

Proceedings of the Medical Imaging 2016: Digital Pathology, San Diego, California, United States, 27 February, 2016

2015

CytoASP: a Cytoscape app for qualitative consistency reasoning, prediction and repair in biological networks.

Aristotelis Kittas, Amélie Barozet, Jekaterina Sereshti, Niels Grabe, Sophia Tsoka

BMC Syst. Biol., 2015

2014

Zooming in: high resolution 3D reconstruction of differently stained histological whole slide images.

Johannes Lotz, Judith Berger, Benedikt Müller, Kai Breuhahn, Niels Grabe, Stefan Heldmann, André Homeyer, Bernd Lahrmann, Hendrik Laue, Janine Olesch, Michael Schwier, Oliver Sedlaczek, Arne Warth

Proceedings of the Medical Imaging 2014: Digital Pathology, 2014

2013

Bridging the scales: semantic integration of quantitative SBML in graphical multi-cellular models and simulations with EPISIM and COPASI.

Thomas Sütterlin, Christoph Kolb, Hartmut Dickhaus, Dirk Jäger, Niels Grabe

Bioinform., 2013

2012

Revisiting the Training of Logic Models of Protein Signaling Networks with a Formal Approach based on Answer Set Programming

Santiago Videla, Carito Guziolowski, Federica Eduati, Sven Thiele, Niels Grabe, Julio Saez-Rodriguez, Anne Siegel

CoRR, 2012

Revisiting the Training of Logic Models of Protein Signaling Networks with ASP.

Santiago Videla, Carito Guziolowski, Federica Eduati, Sven Thiele, Niels Grabe, Julio Saez-Rodriguez, Anne Siegel

Proceedings of the Computational Methods in Systems Biology, 2012

2010

Spatial quantification and classification of skin response following perturbation using organotypic skin cultures.

Thora Pommerencke, Kathi Westphal, Claudia Ernst, Kai Safferling, Hartmut Dickhaus, Thorsten Steinberg, Pascal Tomakidi, Niels Grabe

Bioinform., 2010

Image-based Quantification of Skin Irritation by Spatial Biomarker Profiling.

Thora Pommerencke, Kathi Westphal, Claudia Ernst, Hartmut Dickhaus, Niels Grabe

Proceedings of the Bildverarbeitung für die Medizin 2010 - Algorithmen - Systeme, 2010

2009

Modeling multi-cellular behavior in epidermal tissue homeostasis via finite state machines in multi-agent systems.

Thomas Sütterlin, Simone Huber, Hartmut Dickhaus, Niels Grabe

Bioinform., 2009

Vollautomatische Einzelzellerkennung auf fluoreszenten Gewebeschnitten humaner Epidermis.

Thora Pommerencke, Hartmut Dickhaus, Niels Grabe

Proceedings of the Bildverarbeitung für die Medizin 2009: Algorithmen - Systeme, 2009

2008

Nuclear staining and relative distance for quantifying epidermal differentiation in biomarker expression profiling.

Thora Pommerencke, Thorsten Steinberg, Hartmut Dickhaus, Pascal Tomakidi, Niels Grabe

BMC Bioinform., 2008

2007

Reconstructing protein networks of epithelial differentiation from histological sections.

Niels Grabe, Thora Pommerencke, Thorsten Steinberg, Hartmut Dickhaus, Pascal Tomakidi

Bioinform., 2007

Simulating psoriasis by altering transit amplifying cells.

Niels Grabe, Karsten Neuber

Bioinform., 2007

Ermittlung von räumlichen Proteinexpressionsmustern mittels Bildverarbeitung.

Thora Pommerencke, Pascal Tomakidi, Hartmut Dickhaus, Niels Grabe

Proceedings of the Bildverarbeitung für die Medizin 2007, 2007

2006

Modelling Epidermal Homeostasis as an Approach for Clinical Bioinformatics.

Niels Grabe, Thora Pommerencke, Dennis Müller, Simone Huber, Karsten Neuber, Hartmut Dickhaus

Proceedings of the Ubiquity: Technologies for Better Health in Aging Societies, 2006

2005

A multicellular systems biology model predicts epidermal morphology, kinetics and Ca²⁺ flow.

Niels Grabe, Karsten Neuber

Bioinform., 2005

2004

Highly specific prediction of phosphorylation sites in proteins.

Matthias Koenig, Niels Grabe

Bioinform., 2004

2000

AliBaba2: Context specific identification of transcription factor binding sites.

Niels Grabe

Silico Biol., 2000

1999

Molekulare Bioinformatik - Informationsfusion zur Genregulation.

Niels Grabe

Proceedings of the Informatik '99, 1999

Predicting transcription factor binding sites by constructing context specific matrices.

Niels Grabe, Ralf Hofestädt

Proceedings of the German Conference on Bioinformatics, 1999

1998

A promoter model based on different combinations of binding sites.

Niels Grabe, Ralf Hofestädt

Proceedings of the German Conference on Bioinformatics, 1998