Olli-P. Kallioniemi

Orcid: 0000-0002-3231-0332

According to our database1, Olli-P. Kallioniemi authored at least 19 papers between 1999 and 2023.

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Bibliography

2023
Breeze 2.0: an interactive web-tool for visual analysis and comparison of drug response data.
Nucleic Acids Res., July, 2023

2020
Breeze: an integrated quality control and data analysis application for high-throughput drug screening.
Bioinform., 2020

2016
Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization.
Bioinform., 2016

2015
Impact of normalization methods on high-throughput screening data with high hit rates and drug testing with dose-response data.
Bioinform., 2015

2014
Integrative and Personalized QSAR Analysis in Cancer by Kernelized Bayesian Matrix Factorization.
J. Chem. Inf. Model., 2014

Identification of structural features in chemicals associated with cancer drug response: a systematic data-driven analysis.
Bioinform., 2014

2012
Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs.
BMC Bioinform., 2012

Delivering ICT infrastructure for biomedical research.
Proceedings of the 2012 Joint Working IEEE/IFIP Conference on Software Architecture and European Conference on Software Architecture, 2012

2011
On the organization of bioinformatics core services in biology-based research institutes.
Bioinform., 2011

Alignment of gene expression profiles from test samples against a reference database: New method for context-specific interpretation of microarray data.
BioData Min., 2011

2009
Critical Comparison of Virtual Screening Methods against the MUV Data Set.
J. Chem. Inf. Model., 2009

Comparison of structure fingerprint and molecular interaction field based methods in explaining biological similarity of small molecules in cell-based screens.
J. Comput. Aided Mol. Des., 2009

Comparison of Affymetrix data normalization methods using 6, 926 experiments across five array generations.
BMC Bioinform., 2009

2004
A strategy for identifying putative causes of gene expression variation in human cancers.
J. Frankl. Inst., 2004

2003
Analysis and Visualization of Gene Expression Microarray Data in Human Cancer Using Self-Organizing Maps.
Mach. Learn., 2003

A novel strategy for microarray quality control using Bayesian networks.
Bioinform., 2003

2002
Simulation Toolbox for 3D-FISH Spot-Counting Algorithms.
Real Time Imaging, 2002

2000
Distance-Based Reconstruction of Tree Models for Oncogenesis.
J. Comput. Biol., 2000

1999
Inferring Tree Models for Oncogenesis from Comparative Genome Hybridization Data.
J. Comput. Biol., 1999


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