Peter K. Sorger

Orcid: 0000-0002-3364-1838

According to our database1, Peter K. Sorger authored at least 30 papers between 2004 and 2024.

Collaborative distances:

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

Online presence:

On csauthors.net:

Bibliography

2024
Residency Octree: A Hybrid Approach for Scalable Web-Based Multi-Volume Rendering.
IEEE Trans. Vis. Comput. Graph., January, 2024

Pass-Efficient Algorithms for Graph Spectral Clustering (Student Abstract).
Proceedings of the Thirty-Eighth AAAI Conference on Artificial Intelligence, 2024

2023
A Hybrid Structure-Based Machine Learning Approach for Predicting Kinase Inhibition by Small Molecules.
J. Chem. Inf. Model., September, 2023

Correction: Paired evaluation of machine-learning models characterizes effects of confounders and outliers.
Patterns, August, 2023

Paired evaluation of machine-learning models characterizes effects of confounders and outliers.
Patterns, August, 2023

Visinity: Visual Spatial Neighborhood Analysis for Multiplexed Tissue Imaging Data.
IEEE Trans. Vis. Comput. Graph., 2023

2022
Scope2Screen: Focus+Context Techniques for Pathology Tumor Assessment in Multivariate Image Data.
IEEE Trans. Vis. Comput. Graph., 2022

Fides: Reliable trust-region optimization for parameter estimation of ordinary differential equation models.
PLoS Comput. Biol., 2022

Stitching and registering highly multiplexed whole-slide images of tissues and tumors using ASHLAR.
Bioinform., 2022

2021
The Dark Kinase Knowledgebase: an online compendium of knowledge and experimental results of understudied kinases.
Nucleic Acids Res., 2021

A Crisis-Responsive Framework for Medical Device Development Applied to the COVID-19 Pandemic.
Frontiers Digit. Health, 2021

2020
Facetto: Combining Unsupervised and Supervised Learning for Hierarchical Phenotype Analysis in Multi-Channel Image Data.
IEEE Trans. Vis. Comput. Graph., 2020

Minerva: a light-weight, narrative image browser for multiplexed tissue images.
J. Open Source Softw., 2020

Channel Embedding for Informative Protein Identification from Highly Multiplexed Images.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

2019
Inferring reaction network structure from single-cell, multiplex data, using toric systems theory.
PLoS Comput. Biol., 2019

INDRA-IPM: interactive pathway modeling using natural language with automated assembly.
Bioinform., 2019

2018
FamPlex: a resource for entity recognition and relationship resolution of human protein families and complexes in biomedical text mining.
BMC Bioinform., 2018

2014
LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures.
Nucleic Acids Res., 2014

2013
Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE).
Bioinform., 2013

2012
Exploring the Contextual Sensitivity of Factors that Determine Cell-to-Cell Variability in Receptor-Mediated Apoptosis.
PLoS Comput. Biol., 2012

Creating and analyzing pathway and protein interaction compendia for modelling signal transduction networks.
BMC Syst. Biol., 2012

2011
Training Signaling Pathway Maps to Biochemical Data with Constrained Fuzzy Logic: Quantitative Analysis of Liver Cell Responses to Inflammatory Stimuli.
PLoS Comput. Biol., 2011

2010
Systematic calibration of a cell signaling network model.
BMC Bioinform., 2010

2009
The Logic of EGFR/ErbB Signaling: Theoretical Properties and Analysis of High-Throughput Data.
PLoS Comput. Biol., 2009

Fuzzy Logic Analysis of Kinase Pathway Crosstalk in TNF/EGF/Insulin-Induced Signaling.
PLoS Comput. Biol., 2009

2008
Flexible informatics for linking experimental data to mathematical models via <i>DataRail</i>.
Bioinform., 2008

Modeling pro-death signaling pathways in cancer hepatocytes using multi-combinatorial treatments of inhibitors and stimuli.
Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

2007
Phenotypic clustering of yeast mutants based on kinetochore microtubule dynamics.
Bioinform., 2007

2006
A Data-Driven Computational Model of the ErbB Receptor Signaling Network.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

2004
Cue-Signal-Response Analysis of TNF-Induced Apoptosis by Partial Least Squares Regression of Dynamic Multivariate Data.
J. Comput. Biol., 2004


  Loading...