Qian Zhu

According to our database, Qian Zhu authored at least 52 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Clustering rare diseases within an ontology-enriched knowledge graph.

Jaleal Sanjak, Jessica Binder, Arjun Singh Yadaw, Qian Zhu, Ewy A Mathé

J. Am. Medical Informatics Assoc., December, 2023

User Centered Rare Disease Clinical Trial Knowledge Graph (RCTKG).

Jeremy Parker Yang, Devon Leadman, Richard M. Ballew, Eric Sid, Yanji Xu, Ewy A Mathé, Qian Zhu

Proceedings of the MEDINFO 2023 - The Future Is Accessible, 2023

2022

Rare disease-based scientific annotation knowledge graph.

Qian Zhu, Chunxu Qu, Ruizheng Liu, Gunjan Vatas, Andrew Clough, Ðac-Trung Nguyen, Eric Sid, Ewy A Mathé, Yanji Xu

Frontiers Artif. Intell., 2022

Editorial: Biomedical informatics applications in rare diseases.

Qian Zhu, Yong-Zi Chen, Yanji Xu

Frontiers Artif. Intell., 2022

Experiments with LDA and Top2Vec for embedded topic discovery on social media data - A case study of cystic fibrosis.

Bradley A. Karas, Sue Qu, Yanji Xu, Qian Zhu

Frontiers Artif. Intell., 2022

Integrative Rare Disease Profile Creation via NormMap to Advance Rare Disease Research.

Devon Leadman, Yanji Xu, Sue Qu, Qian Zhu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Semantic Annotation of NIH Funding Data for Supporting Rare Disease Research.

Szeling Hsu, Sue Qu, Yanji Xu, Qian Zhu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Profiling Tox21 Bioassay Towards Drug Repurposing for Rare Diseases.

Fang Liu, Yanji Xu, Jaleal Sanjak, Andrew Patt, Ruili Huang, Chunxu Qu, Qian Zhu

Proceedings of the AMIA 2022, 2022

2021

Better Understand Rare Disease Patients' Needs by Analyzing Social Media Data - a Case Study of Cystic Fibrosis.

Qian Zhu, Eric Sundstrom, Yanji Xu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Scientific Evidence Based Knowledge Graph in Rare Diseases.

Qian Zhu, Ruizheng Liu, Gunjan Vatas, Andrew Clough, Yanji Xu, Dac-Trung Nguyen, Ewy A Mathé, Eric Sid

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Data Normalization Improves Semantic Annotation - a Case Study of Rare Disease Name Annotation.

Charlie Tang, Yanji Xu, Qian Zhu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020

An integrative knowledge graph for rare diseases, derived from the Genetic and Rare Diseases Information Center (GARD).

Qian Zhu, Dac-Trung Nguyen, Ivan Grishagin, Noel Southall, Eric Sid, Anne Pariser

J. Biomed. Semant., 2020

2019

Multi-layer framework of identifying placenta related research towards Placenta Curated Research Dataset (PCRD) development for the PAT project.

Qian Zhu, Shanna Frierson, Alicia Francis, Lydia Rogers, Daniel Lyman

J. Biomed. Informatics, 2019

Sex, obesity, diabetes, and exposure to particulate matter among patients with severe asthma: Scientific insights from a comparative analysis of open clinical data sources during a five-day hackathon.

Karamarie Fecho, Stanley C. Ahalt, Saravanan Arunachalam, James Champion, Christopher G. Chute, Sarah Davis, Kenneth Gersing, Gustavo Glusman, Jennifer Hadlock, Jewel Lee, Emily R. Pfaff, Max Robinson, Eric Sid, Casey N. Ta, Hao Xu, Richard L. Zhu, Qian Zhu, David B. Peden

J. Biomed. Informatics, 2019

Hybrid Mortality Prediction using Multiple Source Systems.

Isaac Mativo, Yelena Yesha, Michael A. Grasso, Tim Oates, Qian Zhu

CoRR, 2019

2016

Ontology-based collection, representation and analysis of drug-associated neuropathy adverse events.

Abra Guo, Rebecca Racz, Junguk Hur, Yu Lin, Zuoshuang Xiang, Lili Zhao, Jordan Rinder, Guoqian Jiang, Qian Zhu, Yongqun He

J. Biomed. Semant., 2016

Building Locally Discriminative Classifier Ensemble Through Classifier Fusion Among Nearest Neighbors.

Xiangjun Shen, Wen-Chao Zhang, Wei Cai, Ben-Bright B. Benuw, Heping Song, Qian Zhu, Zheng-Jun Zha

Proceedings of the Advances in Multimedia Information Processing - PCM 2016, 2016

Risk feature assessment of readmission for diabetes.

Qian Zhu, Anirudh Akkati, Pornpoh Hongwattanakul

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Analyzing and retrieving illicit drug-related posts from social media.

Tao Ding, Arpita Roy, Zhiyuan Chen, Qian Zhu, Shimei Pan

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Network analysis with PubChem BioAssay: Preliminary study on drug abuse.

Weijian Qin, Qian Zhu

Proceedings of the 2016 IEEE-EMBS International Conference on Biomedical and Health Informatics, 2016

2015

EHR based Genetic Testing Knowledge Base (iGTKB) Development.

Qian Zhu, Hongfang Liu, Christopher G. Chute, Matthew Ferber

BMC Medical Informatics Decis. Mak., December, 2015

Toward a complete dataset of drug-drug interaction information from publicly available sources.

Serkan Ayvaz, John R. Horn, Oktie Hassanzadeh, Qian Zhu, Johann Stan, Nicholas P. Tatonetti, Santiago Vilar, Mathias Brochhausen, Matthias Samwald, Majid Rastegar-Mojarad, Michel Dumontier, Richard D. Boyce

J. Biomed. Informatics, 2015

Review and evaluation of electronic health records-driven phenotype algorithm authoring tools for clinical and translational research.

Jie Xu, Luke V. Rasmussen, Pamela L. Shaw, Guoqian Jiang, Richard C. Kiefer, Huan Mo, Jennifer A. Pacheco, Peter Speltz, Qian Zhu, Joshua C. Denny, Jyotishman Pathak, William K. Thompson, Enid N. H. Montague

J. Am. Medical Informatics Assoc., 2015

Desiderata for computable representations of electronic health records-driven phenotype algorithms.

Huan Mo, William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Guoqian Jiang, Richard C. Kiefer, Qian Zhu, Jie Xu, Enid N. H. Montague, David S. Carrell, Todd Lingren, Frank D. Mentch, Yizhao Ni, Firas H. Wehbe, Peggy L. Peissig, Gerard Tromp, Eric B. Larson, Christopher G. Chute, Jyotishman Pathak, Joshua C. Denny, Peter Speltz, Abel N. Kho, Gail P. Jarvik, Cosmin Adrian Bejan, Marc S. Williams, Kenneth Borthwick, Terrie E. Kitchner, Dan M. Roden, Paul A. Harris

J. Am. Medical Informatics Assoc., 2015

Next generation informatics for big data in precision medicine era.

Yuji Zhang, Qian Zhu, Hongfang Liu

BioData Min., 2015

Cancer based pharmacogenomics network supported with scientific evidences: from the view of drug repurposing.

Liwei Wang, Hongfang Liu, Christopher G. Chute, Qian Zhu

BioData Min., 2015

Acquisition of diabetes-related biological associations using a motif based network: Preliminary results.

Iyanuoluwa Emmanuel Odebode, Aryya Gangopadhyay, Qian Zhu

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

Exploring the Pharmacogenomics Knowledge Base (PharmGKB) for Repositioning Breast Cancer Drugs by Leveraging Web Ontology Language (OWL) and Cheminformatics Approaches.

Qian Zhu, Cui Tao, Feichen Shen, Christopher G. Chute

Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

Cancer Based Pharmacogenomics Network for Drug Repurposing.

Liwei Wang, Hongfang Liu, Christopher G. Chute, Qian Zhu

Proceedings of the Trends and Applications in Knowledge Discovery and Data Mining, 2014

Pharmacological Class Data Representation in the Web Ontology Language (OWL).

Qian Zhu, Cui Tao

Proceedings of the 5th International Conference on Biomedical Ontology, 2014

Genetic testing knowledge base (GTKB) towards individualized genetic test recommendation - An experimental study.

Qian Zhu, Hongfang Liu, Christopher G. Chute, Matthew Ferber

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Qualitative evaluation of three phenotype information models to find methotrexate liver injury.

Qian Zhu, Huan Mo, Luke V. Rasmussen, Andrew R. Post, Jennifer A. Pacheco, Jie Xu, Richard C. Kiefer, Peter Speltz, Enid N. H. Montague, William K. Thompson, Joshua C. Denny, Jyotishman Pathak

Proceedings of the AMIA 2014, 2014

iGenetics: An Individualized Genetic Test Recommendation System Based on EHRs.

Qian Zhu, Hongfang Liu, Christopher G. Chute, Matthew Ferber

Proceedings of the AMIA 2014, 2014

Evaluation of Existing Phenotype Authoring Tools for Clinical Research.

Luke V. Rasmussen, Jie Xu, Ruijue Liu, Qian Zhu, Jennifer A. Pacheco, Jyotishman Pathak, William K. Thompson, Joshua C. Denny, Huan Mo, Richard C. Kiefer, Peter Speltz, Enid N. H. Montague

Proceedings of the AMIA 2014, 2014

Evaluation of RxNorm for Medication Clinical Decision Support.

Robert R. Freimuth, Kelly Wix, Qian Zhu, Mark Siska, Christopher G. Chute

Proceedings of the AMIA 2014, 2014

2013

Disambiguation of PharmGKB drug-disease relations with NDF-RT and SPL.

Qian Zhu, Robert R. Freimuth, Jyotishman Pathak, Matthew J. Durski, Christopher G. Chute

J. Biomed. Informatics, 2013

Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: A case study.

Qian Zhu, Robert R. Freimuth, Zonghui Lian, Scott Bauer, Jyotishman Pathak, Cui Tao, Matthew J. Durski, Christopher G. Chute

J. Biomed. Informatics, 2013

A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data.

Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Qian Zhu, Deepak K. Sharma, Jyotishman Pathak, Stanley M. Huff, Christopher G. Chute

J. Am. Medical Informatics Assoc., 2013

Standardized Drug and Pharmacological Class Network Construction.

Qian Zhu, Guoqian Jiang, Liwei Wang, Christopher G. Chute

Proceedings of the MEDINFO 2013, 2013

Using standardized clinical data modeling and knowledge representation to compute pharmacogenomic data elements.

Qian Zhu, Jyotishman Pathak, Robert R. Freimuth, Christopher G. Chute

Proceedings of the AMIA 2013, 2013

2012

Profiling structured product labeling with NDF-RT and RxNorm.

Qian Zhu, Guoqian Jiang, Christopher G. Chute

J. Biomed. Semant., 2012

Integrating VA's NDF-RT Drug Terminology with PharmGKB: Preliminary Results.

Jyotishman Pathak, Laura C. Weiss, Matthew J. Durski, Qian Zhu, Robert R. Freimuth, Christopher G. Chute

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

A Semantic-Web Oriented Representation of Clinical Element Model for Secondary Use of Electronic Healthcare Data.

Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Jyotishman Pathak, Qian Zhu, Deepak K. Sharma, Stanley M. Huff, Christopher G. Chute

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

A Standardized Drug and Drug Class Universal Network.

Qian Zhu, Guoqian Jiang, Christopher G. Chute

Proceedings of the AMIA 2012, 2012

2011

Semantic Inference using Chemogenomics Data for Drug Discovery.

Qian Zhu, Yuyin Sun, Sashikiran Challa, Ying Ding, Michael S. Lajiness, David J. Wild

BMC Bioinform., 2011

2010

WENDI: A tool for finding non-obvious relationships between compounds and biological properties, genes, diseases and scholarly publications.

Qian Zhu, Michael S. Lajiness, Ying Ding, David J. Wild

J. Cheminformatics, 2010

Chem2Bio2RDF: A Linked Open Data Portal for Chemical Biology

Bin Chen, David J. Wild, Qian Zhu, Ying Ding, Xiao Dong, Madhuvanthi Sankaranarayanan, Huijun Wang, Yuyin Sun

CoRR, 2010

Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data.

Bin Chen, Xiao Dong, Dazhi Jiao, Huijun Wang, Qian Zhu, Ying Ding, David J. Wild

BMC Bioinform., 2010

Using Web Technologies for Integrative Drug Discovery.

Qian Zhu, Sashikiran Challa, Prajakta Purohit, Yuyin Sun, Michael S. Lajiness, David J. Wild, Ying Ding

Proceedings of the 2010 IEEE/WIC/ACM International Conference on Web Intelligence, 2010

Chem2Bio2RDF: A Linked Open Data Portal for Systems Chemical Biology.

Bin Chen, Ying Ding, Huijun Wang, David J. Wild, Xiao Dong, Yuyin Sun, Qian Zhu, Madhuvanthi Sankaranarayanan

Proceedings of the 2010 IEEE/WIC/ACM International Conference on Web Intelligence, 2010

2009

Semantic Rules on Drug Discovery Data.

Sashikiran Challa, David J. Wild, Ying Ding, Qian Zhu

Proceedings of the Semantic Web, Fourth Asian Conference, 2009

2005

Superstructure Searching Algorithm for Generic Reaction Retrieval.

Qian Zhu, Jianhua Yao, Shengang Yuan, Feng Li, Haifeng Chen, Wei Cai, Quan Liao

J. Chem. Inf. Model., 2005