Zuoshuang Xiang

According to our database, Zuoshuang Xiang authored at least 36 papers between 2006 and 2021.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2021

Vaxign2: the second generation of the first Web-based vaccine design program using reverse vaccinology and machine learning.

Edison Ong, Michael F. Cooke, Anthony Huffman, Zuoshuang Xiang, Mei U. Wong, Haihe Wang, Meenakshi Seetharaman, Ninotchka Valdez, Yongqun He

Nucleic Acids Res., 2021

2019

Victors: a web-based knowledge base of virulence factors in human and animal pathogens.

Samantha Sayers, Li Li, Edison Ong, Shunzhou Deng, Guanghua Fu, Yu Lin, Brian Yang, Shelley Zhang, Zhenzong Fa, Bin Zhao, Zuoshuang Xiang, Yongqing Li, Xing-Ming Zhao, Michal Olszewski, Luonan Chen, Yongqun He

Nucleic Acids Res., 2019

2018

The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability.

Yongqun He, Zuoshuang Xiang, Jie Zheng, Yu Lin, James A. Overton, Edison Ong

J. Biomed. Semant., 2018

2017

Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration.

Edison Ong, Zuoshuang Xiang, Bin Zhao, Yue Liu, Yu Lin, Jie Zheng, Chris Mungall, Mélanie Courtot, Alan Ruttenberg, Yongqun He

Nucleic Acids Res., 2017

2016

Ontology-based collection, representation and analysis of drug-associated neuropathy adverse events.

Abra Guo, Rebecca Racz, Junguk Hur, Yu Lin, Zuoshuang Xiang, Lili Zhao, Jordan Rinder, Guoqian Jiang, Qian Zhu, Yongqun He

J. Biomed. Semant., 2016

Ignet: A Centrality and INO-based Web System for Analyzing and Visualizing Literature-mined Networks.

Arzucan Özgür, Junguk Hur, Zuoshuang Xiang, Edison Ong, Dragomir R. Radev, Yongqun He

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

Ontobull and BFOConvert: Web-based Programs to Support Automatic Ontology Conversion.

Edison Ong, Zuoshuang Xiang, Jie Zheng, Barry Smith, Yongqun He

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

2015

Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns.

Zuoshuang Xiang, Jie Zheng, Yu Lin, Yongqun He

J. Biomed. Semant., 2015

Ontology-based representation and analysis of host-Brucella interactions.

Yu Lin, Zuoshuang Xiang, Yongqun He

J. Biomed. Semant., 2015

Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions.

Junguk Hur, Arzucan Özgür, Zuoshuang Xiang, Yongqun He

J. Biomed. Semant., 2015

2014

Updates on the web-based VIOLIN vaccine database and analysis system.

Yongqun He, Rebecca Racz, Samantha Sayers, Yu Lin, Thomas E. Todd, Junguk Hur, Xinna Li, Mukti Patel, Boyang Zhao, Monica Chung, Joseph Ostrow, Andrew Sylora, Priya Dungarani, Guerlain Ulysse, Kanika Kochhar, Boris Vidri, Kelsey Strait, George W. Jourdian, Zuoshuang Xiang

Nucleic Acids Res., 2014

DNAVaxDB: the first web-based DNA vaccine database and its data analysis.

Rebecca Racz, Xinna Li, Mukti Patel, Zuoshuang Xiang, Yongqun He

BMC Bioinform., 2014

CLO: The cell line ontology.

Sirarat Sarntivijai, Yu Lin, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma D. Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Yue Liu, Terue Takatsuki, Kaoru Saijo, Hiroshi Masuya, Yukio Nakamura, Matthew H. Brush, Melissa A. Haendel, Jie Zheng, Christian J. Stoeckert Jr., Bjoern Peters, Christopher J. Mungall, Thomas E. Carey, David J. States, Brian D. Athey, Yongqun He

J. Biomed. Semant., 2014

OAE: The Ontology of Adverse Events.

Yongqun He, Sirarat Sarntivijai, Yu Lin, Zuoshuang Xiang, Abra Guo, Shelley Zhang, Desikan Jagannathan, Luca Toldo, Cui Tao, Barry Smith

J. Biomed. Semant., 2014

Ontodog: a web-based ontology community view generation tool.

Jie Zheng, Zuoshuang Xiang, Christian J. Stoeckert Jr., Yongqun He

Bioinform., 2014

Ontobat: An Ontology-based Semantic Web Approach for Linked Data Processing and Analysis.

Zuoshuang Xiang, Yu Lin, Yongqun He

Proceedings of the 5th International Conference on Biomedical Ontology, 2014

2013

HINO: a BFO-aligned ontology representing human molecular interactions and pathways.

Yongqun He, Zuoshuang Xiang

CoRR, 2013

A genome-wide MeSH-based literature mining system predicts implicit gene-to-gene relationships and networks.

Zuoshuang Xiang, Tingting Qin, Zhaohui S. Qin, Yongqun He

BMC Syst. Biol., 2013

Genome-wide prediction of vaccine targets for human herpes simplex viruses using Vaxign reverse vaccinology.

Zuoshuang Xiang, Yongqun He

BMC Bioinform., 2013

Meta-analysis of variables affecting mouse protection efficacy of whole organism Brucella vaccines and vaccine candidates.

Thomas E. Todd, Omar Tibi, Yu Lin, Samantha Sayers, Denise N. Bronner, Zuoshuang Xiang, Yongqun He

BMC Bioinform., 2013

HINO: BFO-aligned ontology representation of human molecular interactions and pathways.

Zuoshuang Xiang, Yongqun He

Proceedings of the 4th International Conference on Biomedical Ontology, 2013

2012

Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining.

Junguk Hur, Arzucan Özgür, Zuoshuang Xiang, Yongqun He

J. Biomed. Semant., 2012

Ontodog: A Web-based Ontology Community View Generator.

Jie Zheng, Zuoshuang Xiang, Christian J. Stoeckert Jr., Yongqun He

Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Ontorat web server for automatic generation and annotations of new ontology terms.

Zuoshuang Xiang, Yu Lin, Yongqun He

Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

2011

Protegen: a web-based protective antigen database and analysis system.

Brian Yang, Samantha Sayers, Zuoshuang Xiang, Yongqun He

Nucleic Acids Res., 2011

Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology.

Arzucan Özgür, Zuoshuang Xiang, Dragomir R. Radev, Yongqun He

J. Biomed. Semant., 2011

Brucellosis Ontology (IDOBRU) as an extension of the Infectious Disease Ontology.

Yu Lin, Zuoshuang Xiang, Yongqun He

J. Biomed. Semant., 2011

Ontobee: A Linked Data Server and Browser for Ontology Terms.

Zuoshuang Xiang, Chris Mungall, Alan Ruttenberg, Yongqun He

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

OntoFox and its Application in Development of Brucellosis Ontology.

Zuoshuang Xiang, Yu Lin, Yongqun He

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Cell Line Ontology: Redesigning the Cell Line Knowledgebase to Aid Integrative Translational Informatics.

Sirarat Sarntivijai, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Brian D. Athey, Yongqun He

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Towards a Semantic Web Application: Ontology-Driven Ortholog Clustering Analysis.

Yu Lin, Zuoshuang Xiang, Yongqun He

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

AEO: A Realism-Based Biomedical Ontology for the Representation of Adverse Events.

Yongqun He, Zuoshuang Xiang, Sirarat Sarntivijai, Luca Toldo, Werner Ceusters

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2008

VIOLIN: vaccine investigation and online information network.

Zuoshuang Xiang, Thomas E. Todd, Kim P. Ku, Bethany L. Kovacic, Charles B. Larson, Fang Chen, Andrew P. Hodges, Yuying Tian, Elizabeth A. Olenzek, Boyang Zhao, Lesley A. Colby, Howard G. Rush, Janet R. Gilsdorf, George W. Jourdian, Yongqun He

Nucleic Acids Res., 2008

2007

CRCView: a web server for analyzing and visualizing microarray gene expression data using model-based clustering.

Zuoshuang Xiang, Zhaohui S. Qin, Yongqun He

Bioinform., 2007

miniTUBA: medical inference by network integration of temporal data using Bayesian analysis.

Zuoshuang Xiang, Rebecca M. Minter, Xiaoming Bi, Peter J. Woolf, Yongqun He

Bioinform., 2007

2006

BBP: <i>Brucella </i>genome annotation with literature mining and curation.

Zuoshuang Xiang, Wenjie Zheng, Yongqun He

BMC Bioinform., 2006