Siddhartha Jonnalagadda

According to our database, Siddhartha Jonnalagadda authored at least 49 papers between 2009 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Massive-scale Decoding for Text Generation using Lattices.

Jiacheng Xu, Siddhartha Jonnalagadda, Greg Durrett

Proceedings of the 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2022

2021

Feasibility study of audio recording patient-clinician verbal communications in home healthcare settings.

Maryam Zolnoori, Sasha Vergez, Zoran Kostic, Siddhartha R. Jonnalagadda, Maxim Topaz

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2017

Automatic identification of high impact articles in PubMed to support clinical decision making.

Jiantao Bian, Mohammad Amin Morid, Siddhartha Jonnalagadda, Gang Luo, Guilherme Del Fiol

J. Biomed. Informatics, 2017

2016

Classification of clinically useful sentences in clinical evidence resources.

Mohammad Amin Morid, Marcelo Fiszman, Kalpana Raja, Siddhartha Jonnalagadda, Guilherme Del Fiol

J. Biomed. Informatics, 2016

PDF text classification to leverage information extraction from publication reports.

Duy Duc An Bui, Guilherme Del Fiol, Siddhartha Jonnalagadda

J. Biomed. Informatics, 2016

Extractive text summarization system to aid data extraction from full text in systematic review development.

Duy Duc An Bui, Guilherme Del Fiol, John F. Hurdle, Siddhartha Jonnalagadda

J. Biomed. Informatics, 2016

Formative evaluation of a patient-specific clinical knowledge summarization tool.

Guilherme Del Fiol, Javed Mostafa, Dongqiuye Pu, Richard Medlin, Stacey Slager, Siddhartha Jonnalagadda, Charlene R. Weir

Int. J. Medical Informatics, 2016

A Hybrid Citation Retrieval Algorithm for Evidence-based Clinical Knowledge Summarization: Combining Concept Extraction, Vector Similarity and Query Expansion for High Precision.

Kalpana Raja, Andrew J. Sauer, Ravi Prakash Garg, Melanie R. Klerer, Siddhartha R. Jonnalagadda

CoRR, 2016

Automatically extracting, ranking and visually summarizing the treatments for a disease.

Prakash Reddy Putta, John J. Dzak III, Siddhartha R. Jonnalagadda

CoRR, 2016

CRTS: A type system for representing clinical recommendations.

Ravi Prakash Garg, Kalpana Raja, Siddhartha R. Jonnalagadda

CoRR, 2016

A Bootstrap Machine Learning Approach to Identify Rare Disease Patients from Electronic Health Records.

Ravi Prakash Garg, Shu Dong, Sanjiv J. Shah, Siddhartha R. Jonnalagadda

CoRR, 2016

Using Natural Language Processing to Screen Patients with Active Heart Failure: An Exploration for Hospital-wide Surveillance.

Shu Dong, R. Kannan Mutharasan, Siddhartha Jonnalagadda

CoRR, 2016

A Novel Framework to Expedite Systematic Reviews by Automatically Building Information Extraction Training Corpora.

Tanmay Basu, Shraman Kumar, Abhishek Kalyan, Priyanka Jayaswal, Pawan Goyal, Stephen Pettifer, Siddhartha Jonnalagadda

CoRR, 2016

An Information Extraction Approach to Prescreen Heart Failure Patients for Clinical Trials.

Abhishek Kalyan Adupa, Ravi Prakash Garg, Jessica Corona-Cox, Sanjiv J. Shah, Siddhartha R. Jonnalagadda

CoRR, 2016

Towards Evidence-Based Precision Medicine: Extracting Population Information from Biomedical Text using Binary Classifiers and Syntactic Patterns.

Kalpana Raja, Naman Dasot, Pawan Goyal, Siddhartha R. Jonnalagadda

Proceedings of the Summit on Clinical Research Informatics, 2016

Feasibility of Extracting Key Elements from ClinicalTrials.gov to Support Clinicians' Patient Care Decision.

Heejun Kim, Jiantao Bian, Javed Mostafa, Siddhartha R. Jonnalagadda, Guilherme Del Fiol

Proceedings of the AMIA 2016, 2016

2015

Agile text mining for the 2014 i2b2/UTHealth Cardiac risk factors challenge.

James Cormack, Chinmoy Nath, David Milward, Kalpana Raja, Siddhartha R. Jonnalagadda

J. Biomed. Informatics, 2015

Automatically finding relevant citations for clinical guideline development.

Duy Duc An Bui, Siddhartha Jonnalagadda, Guilherme Del Fiol

J. Biomed. Informatics, 2015

Concept based Information Retrieval for Clinical Case Summaries.

Jakob Stöber, Bret S. E. Heale, Kelley Fulghum, Guilherme Del Fiol, Heejun Kim, Kalpana Raja, Siddhartha Jonnalagadda

Proceedings of The Twenty-Fourth Text REtrieval Conference, 2015

Automated Citation Retrieval System for Clinical Knowledge Management.

Kalpana Raja, Andrew J. Sauer, Melanie R. Klerer, Siddhartha R. Jonnalagadda

Proceedings of the AMIA 2015, 2015

Automated Approach to Extract Cardiovascular Phenotypes from Echocardiography Reports.

Chinmoy Nath, Mazen Albaghdadi, Siddhartha R. Jonnalagadda

Proceedings of the AMIA 2015, 2015

Classification of Clinically Useful Sentences in MEDLINE.

Mohammad Amin Morid, Siddhartha R. Jonnalagadda, Marcelo Fiszman, Kalpana Raja, Guilherme Del Fiol

Proceedings of the AMIA 2015, 2015

Natural Language Processing and Data Mining for Clinical Text.

Kalpana Raja, Siddhartha Jonnalagadda

Proceedings of the Healthcare Data Analytics., 2015

2014

Text summarization in the biomedical domain: A systematic review of recent research.

Rashmi Mishra, Jiantao Bian, Marcelo Fiszman, Charlene R. Weir, Siddhartha Jonnalagadda, Javed Mostafa, Guilherme Del Fiol

J. Biomed. Informatics, 2014

An Automated Approach for Ranking Journals to Help in Clinician Decision Support.

Siddhartha Jonnalagadda, Soheil Moosavinasab, Chinmoy Nath, Dingcheng Li, Christopher G. Chute, Hongfang Liu

Proceedings of the AMIA 2014, 2014

2013

Comprehensive temporal information detection from clinical text: medical events, time, and TLINK identification.

Sunghwan Sohn, Kavishwar B. Wagholikar, Dingcheng Li, Siddhartha Jonnalagadda, Cui Tao, Ravikumar Komandur Elayavilli, Hongfang Liu

J. Am. Medical Informatics Assoc., 2013

Automatically extracting sentences from Medline citations to support clinicians' information needs.

Siddhartha Jonnalagadda, Guilherme Del Fiol, Richard Medlin, Charlene R. Weir, Marcelo Fiszman, Javed Mostafa, Hongfang Liu

J. Am. Medical Informatics Assoc., 2013

A new iterative method to reduce workload in systematic review process.

Siddhartha Jonnalagadda, Diana B. Petitti

Int. J. Comput. Biol. Drug Des., 2013

Pooling annotated corpora for clinical concept extraction.

Kavishwar B. Wagholikar, Manabu Torii, Siddhartha Jonnalagadda, Hongfang Liu

J. Biomed. Semant., 2013

Automatic Identification of Comparative Effectiveness Research from Medline Citations to Support Clinicians' Treatment Information Needs.

Mingyuan Zhang, Guilherme Del Fiol, Randall Grout, Siddhartha Jonnalagadda, Richard Medlin, Rashmi Mishra, Charlene R. Weir, Hongfang Liu, Javed Mostafa, Marcelo Fiszman

Proceedings of the MEDINFO 2013, 2013

Integrated cTAKES for Concept Mention Detection and Normalization.

Hongfang Liu, Kavishwar B. Wagholikar, Siddhartha Jonnalagadda, Sunghwan Sohn

Proceedings of the Working Notes for CLEF 2013 Conference , 2013

Towards assigning references using semantic, journal and citation relevance.

Dingcheng Li, Hongfang Liu, Christopher G. Chute, Siddhartha Jonnalagadda

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Prioritizing journals relevant to a topic for addressing clinicians' information needs.

Siddhartha Jonnalagadda, Soheil Moosavinasab, Dingcheng Li, Martin D. Abel, Christopher G. Chute, Hongfang Liu

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Automatically Extracting Clinically Useful Sentences from UpToDate to Support Clinicians' Information Needs.

Rashmi Mishra, Guilherme Del Fiol, Halil Kilicoglu, Siddhartha Jonnalagadda, Marcelo Fiszman

Proceedings of the AMIA 2013, 2013

Prioritize journals relevant to a clinical topic: A survey of US cardiologists about heart failure.

Siddhartha Jonnalagadda, Christopher G. Chute, Hongfang Liu

Proceedings of the AMIA 2013, 2013

2012

Enhancing clinical concept extraction with distributional semantics.

Siddhartha Jonnalagadda, Trevor Cohen, Stephen T. Wu, Graciela Gonzalez

J. Biomed. Informatics, 2012

Coreference analysis in clinical notes: a multi-pass sieve with alternate anaphora resolution modules.

Siddhartha Jonnalagadda, Dingcheng Li, Sunghwan Sohn, Stephen Tze-Inn Wu, Kavishwar B. Wagholikar, Manabu Torii, Hongfang Liu

J. Am. Medical Informatics Assoc., 2012

Discovering opinion leaders for medical topics using news articles.

Siddhartha Jonnalagadda, Ryan Peeler, Philip Topham

J. Biomed. Semant., 2012

Systematic Analysis of Cross-Institutional Medication Description Patterns in Clinical Notes.

Sunghwan Sohn, Sean P. Murphy, Siddhartha Jonnalagadda, Kavishwar B. Wagholikar, Stephen T. Wu, Christopher G. Chute, Hongfang Liu, Scott R. Halgrim

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

Asthma Status Identification with Natural Language Processing.

Stephen T. Wu, Young J. Juhn, Sunghwan Sohn, Ravikumar Komandur Elayavilli, Kavishwar B. Wagholikar, Siddhartha Jonnalagadda, Hongfang Liu

Proceedings of the AMIA 2012, 2012

Towards a semantic lexicon for clinical natural language processing.

Hongfang Liu, Stephen T. Wu, Dingcheng Li, Siddhartha Jonnalagadda, Sunghwan Sohn, Kavishwar B. Wagholikar, Peter J. Haug, Stanley M. Huff, Christopher G. Chute

Proceedings of the AMIA 2012, 2012

2011

An Effective Approach to Biomedical Information Extraction with Limited Training Data.

Siddhartha Jonnalagadda

PhD thesis, 2011

BioSimplify: an open source sentence simplification engine to improve recall in automatic biomedical information extraction

Siddhartha Jonnalagadda, Graciela Gonzalez

CoRR, 2011

NEMO: Extraction and normalization of organization names from PubMed affiliation strings

Siddhartha Jonnalagadda, Philip Topham

CoRR, 2011

Evaluating Distributional Semantic and Feature Selection for Extracting Relationships from Biological Text.

Ehsan Emadzadeh, Siddhartha Jonnalagadda, Graciela Gonzalez

Proceedings of the 10th International Conference on Machine Learning and Applications and Workshops, 2011

2010

Efficient Extraction of Protein-Protein Interactions from Full-Text Articles.

Jörg Hakenberg, Robert Leaman, Nguyen Ha Vo, Siddhartha Jonnalagadda, Ryan Sullivan, Christopher Miller, Luis Tari, Chitta Baral, Graciela Gonzalez

IEEE ACM Trans. Comput. Biol. Bioinform., 2010

Sentence Simplification Aids Protein-Protein Interaction Extraction

Siddhartha Jonnalagadda, Graciela Gonzalez

CoRR, 2010

A Distributional Semantics Approach to Simultaneous Recognition of Multiple Classes of Named Entities.

Siddhartha Jonnalagadda, Robert Leaman, Trevor Cohen, Graciela Gonzalez

Proceedings of the Computational Linguistics and Intelligent Text Processing, 2010

2009

Towards Effective Sentence Simplification for Automatic Processing of Biomedical Text.

Siddhartha Jonnalagadda, Luis Tari, Jörg Hakenberg, Chitta Baral, Graciela Gonzalez

Proceedings of the Human Language Technologies: Conference of the North American Chapter of the Association of Computational Linguistics, Proceedings, May 31, 2009