Graciela Gonzalez-Hernandez

According to our database1, Graciela Gonzalez-Hernandez authored at least 94 papers between 1998 and 2021.

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Bibliography

2021
Text classification models for the automatic detection of nonmedical prescription medication use from social media.
BMC Medical Informatics Decis. Mak., 2021

ReportAGE: Automatically extracting the exact age of Twitter users based on self-reports in tweets.
CoRR, 2021

Advanced Methods for Big Data Analytics in Women's Health.
Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021

Addressing Extreme Imbalance for Detecting Medications Mentioned in Twitter User Timelines.
Proceedings of the Artificial Intelligence in Medicine, 2021

2020
GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography.
Bioinform., 2020

Ideas for how informaticians can get involved with COVID-19 research.
BioData Min., 2020

UPennHLP at WNUT-2020 Task 2 : Transformer models for classification of COVID19 posts on Twitter.
Proceedings of the Sixth Workshop on Noisy User-generated Text, 2020

2019
An interpretable natural language processing system for written medical examination assessment.
J. Biomed. Informatics, 2019

Deep neural networks ensemble for detecting medication mentions in tweets.
J. Am. Medical Informatics Assoc., 2019

Comment on: "Deep learning for pharmacovigilance: recurrent neural network architectures for labeling adverse drug reactions in Twitter posts".
J. Am. Medical Informatics Assoc., 2019

Towards Automatic Bot Detection in Twitter for Health-related Tasks.
CoRR, 2019

Automatically Identifying Comparator Groups on Twitter for Digital Epidemiology of Pregnancy Outcomes.
CoRR, 2019

Disease associations depend on visit type: results from a visit-wide association study.
BioData Min., 2019

SemEval-2019 Task 12: Toponym Resolution in Scientific Papers.
Proceedings of the 13th International Workshop on Semantic Evaluation, 2019

Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature.
Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019


Towards Automating Location-Specific Opioid Toxicosurveillance from Twitter via Data Science Methods.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

2018
An unsupervised and customizable misspelling generator for mining noisy health-related text sources.
J. Biomed. Informatics, 2018

Social media mining for birth defects research: A rule-based, bootstrapping approach to collecting data for rare health-related events on Twitter.
J. Biomed. Informatics, 2018

Data and systems for medication-related text classification and concept normalization from Twitter: insights from the Social Media Mining for Health (SMM4H)-2017 shared task.
J. Am. Medical Informatics Assoc., 2018

Automatically Detecting Self-Reported Birth Defect Outcomes on Twitter for Large-scale Epidemiological Research.
CoRR, 2018

GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records.
Bioinform., 2018

Deep neural networks and distant supervision for geographic location mention extraction.
Bioinform., 2018

Session Introduction.
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

Clinical NER and Relation Extraction using Bi-Char-LSTMs and Random Forest Classifiers.
Proceedings of the 1st International Workshop on Medication and Adverse Drug Event Detection, 2018

A Rule-based Approach to Determining Pregnancy Timeframe from Contextual Social Media Postings.
Proceedings of the 2018 International Conference on Digital Health, 2018

2017
Social media mining for identification and exploration of health-related information from pregnant women.
CoRR, 2017

Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research.
Database J. Biol. Databases Curation, 2017

HLP$@$UPenn at SemEval-2017 Task 4A: A simple, self-optimizing text classification system combining dense and sparse vectors.
Proceedings of the 11th International Workshop on Semantic Evaluation, 2017

Detecting Personal Medication Intake in Twitter: An Annotated Corpus and Baseline Classification System.
Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017

Overview of the Second Social Media Mining for Health (SMM4H) Shared Tasks at AMIA 2017.
Proceedings of the 2nd Social Media Mining for Health Research and Applications Workshop co-located with the American Medical Informatics Association Annual Symposium (AMIA 2017), 2017

CSaRUS-CNN at AMIA-2017 Tasks 1, 2: Under Sampled CNN for Text Classification.
Proceedings of the 2nd Social Media Mining for Health Research and Applications Workshop co-located with the American Medical Informatics Association Annual Symposium (AMIA 2017), 2017

Hybrid Semantic Analysis for Mapping Adverse Drug Reaction Mentions in Tweets to Medical Terminology.
Proceedings of the AMIA 2017, 2017

2016
Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts.
J. Biomed. Informatics, 2016

A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records.
J. Am. Medical Informatics Assoc., 2016

Mining the Web for Pharmacovigilance: the Case Study of Duloxetine and Venlafaxine.
CoRR, 2016

Recent Advances and Emerging Applications in Text and Data Mining for Biomedical Discovery.
Briefings Bioinform., 2016

DiegoLab16 at SemEval-2016 Task 4: Sentiment Analysis in Twitter using Centroids, Clusters, and Sentiment Lexicons.
Proceedings of the 10th International Workshop on Semantic Evaluation, 2016

Finding Potentially Unsafe Nutritional Supplements from User Reviews with Topic Modeling.
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

Social Media Mining Shared Task Workshop.
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

Session Introduction.
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

Automatic Prediction of Linguistic Decline in Writings of Subjects with Degenerative Dementia.
Proceedings of the NAACL HLT 2016, 2016

Data, tools and resources for mining social media drug chatter.
Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining, 2016

2015
Utilizing social media data for pharmacovigilance: A review.
J. Biomed. Informatics, 2015

Portable automatic text classification for adverse drug reaction detection via multi-corpus training.
J. Biomed. Informatics, 2015

Pharmacovigilance from social media: mining adverse drug reaction mentions using sequence labeling with word embedding cluster features.
J. Am. Medical Informatics Assoc., 2015

Knowledge-driven geospatial location resolution for phylogeographic models of virus migration.
Bioinform., 2015

DIEGOLab: An Approach for Message-level Sentiment Classification in Twitter.
Proceedings of the 9th International Workshop on Semantic Evaluation, 2015

Session Introduction.
Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

2014
Overview of the gene ontology task at BioCreative IV.
Database J. Biol. Databases Curation, 2014

Unsupervised gene function extraction using semantic vectors.
Database J. Biol. Databases Curation, 2014

Session introduction.
Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

Natural Language Processing Methods for Enhancing Geographic Metadata for Phylogeography of Zoonotic Viruses.
Proceedings of BioNLP, Baltimore, Maryland, USA, 2014

Text Classification towards Detecting Misdiagnosis of an Epilepsy Syndrome in a Pediatric Population.
Proceedings of the AMIA 2014, 2014

Pharmacovigilance on Twitter? Mining Tweets for Adverse Drug Reactions.
Proceedings of the AMIA 2014, 2014

2013
Towards generating a patient's timeline: Extracting temporal relationships from clinical notes.
J. Biomed. Informatics, 2013

Session introduction.
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

2012
Incremental Information Extraction Using Relational Databases.
IEEE Trans. Knowl. Data Eng., 2012

Enhancing clinical concept extraction with distributional semantics.
J. Biomed. Informatics, 2012

Proposed Ontology for Seizure and Epilepsy.
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Automatic Approaches for Gene-Drug Interaction Extraction from Biomedical Text: Corpus and Comparative Evaluation.
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

2011
Enhancing phylogeography by improving geographical information from GenBank.
J. Biomed. Informatics, 2011

Biomedical Informatics in Translational Research, Hai Hu, Richard J. Mural, Michael N. Liebman (Eds.). Artech House (2008).
J. Biomed. Informatics, 2011

BioSimplify: an open source sentence simplification engine to improve recall in automatic biomedical information extraction
CoRR, 2011

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.
BMC Bioinform., 2011

The GNAT library for local and remote gene mention normalization.
Bioinform., 2011

Towards Integrative Gene Prioritization in Alzheimer's Disease.
Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

The DIEGO Lab Graph Based Gene Normalization System.
Proceedings of the 10th International Conference on Machine Learning and Applications and Workshops, 2011

Evaluating Distributional Semantic and Feature Selection for Extracting Relationships from Biological Text.
Proceedings of the 10th International Conference on Machine Learning and Applications and Workshops, 2011

Applications for a Translational Biomedical Ontology Model.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Double Layered Learning for Biological Event Extraction from Text.
Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

2010
Efficient Extraction of Protein-Protein Interactions from Full-Text Articles.
IEEE ACM Trans. Comput. Biol. Bioinform., 2010

Sentence Simplification Aids Protein-Protein Interaction Extraction
CoRR, 2010

GenerIE: Information extraction using database queries.
Proceedings of the 26th International Conference on Data Engineering, 2010

A Distributional Semantics Approach to Simultaneous Recognition of Multiple Classes of Named Entities.
Proceedings of the Computational Linguistics and Intelligent Text Processing, 2010

Towards Internet-Age Pharmacovigilance: Extracting Adverse Drug Reactions from User Posts in Health-Related Social Networks.
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010

2009
Querying Parse Tree Database of Medline Text to Synthesize User-Specific Biomolecular Networks.
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

Towards Effective Sentence Simplification for Automatic Processing of Biomedical Text.
Proceedings of the Human Language Technologies: Conference of the North American Chapter of the Association of Computational Linguistics, Proceedings, May 31, 2009

Molecular event extraction from Link Grammar parse trees.
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009

2008
BANNER: An Executable Survey of Advances in Biomedical Named Entity Recognition.
Proceedings of the Biocomputing 2008, 2008

Inter-species normalization of gene mentions with GNAT.
Proceedings of the ECCB'08 Proceedings, 2008

2007
Passage Relevancy Through Semantic Relatedness.
Proceedings of The Sixteenth Text REtrieval Conference, 2007

Mining Gene-Disease Relationships from Biomedical Literature: Weighting Proteinprotein Interactions and Connectivity.
Proceedings of the Biocomputing 2007, 2007

Web Service Orchestration for Bioinformatics Systems: Challenges and Current Workflow Definition Approaches.
Proceedings of the 2007 IEEE International Conference on Web Services (ICWS 2007), 2007

2006
ASU at TREC 2006 Genomics Track.
Proceedings of the Fifteenth Text REtrieval Conference, 2006

A systematic approach to active and cooperative learning in CS1 and its effects on CS2.
Proceedings of the 37th SIGCSE Technical Symposium on Computer Science Education, 2006

2005
Alan: An Action Language For Modelling Non-Markovian Domains.
Stud Logica, 2005

Genomic Information Retrieval Through Selective Extraction and Tagging by the ASU-BioAL Group.
Proceedings of the Fourteenth Text REtrieval Conference, 2005

2002
Modeling Multimedia Displays Using Action Based Temporal Logic.
Proceedings of the Visual and Multimedia Information Management, 2002

1999
Specifying Generic Multimedia 3D Visualizations and Temporal Presentations from Database Queries.
Proceedings of the IEEE International Conference on Multimedia Computing and Systems, 1999

1998
Intervals Help to Design an Imaging System.
Reliab. Comput., 1998

Conceptual Modeling and Querying in Multimedia Databases.
Multim. Tools Appl., 1998

SQL+D: Extended Display Capabilities for Multimedia Database Queries.
Proceedings of the 6th ACM International Conference on Multimedia '98, 1998

Design and Implementation of Display Specification for Multimedia Answers.
Proceedings of the Fourteenth International Conference on Data Engineering, 1998


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