Halil Kilicoglu

CoRR, 2023

Commonsense-Aware Prompting for Controllable Empathetic Dialogue Generation.

[BibT_eX]

[DOI]

Yiren Liu

CoRR, 2023

Repurposing Drugs for Alzheimer's Diseases through Link Prediction on Biomedical Literature.

[BibT_eX]

[DOI]

Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023

2022

Discovering novel drug-supplement interactions using SuppKG generated from the biomedical literature.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2022

Call for papers: Semantics-enabled biomedical literature analytics.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2022

Developing a Knowledge Graph Framework for Pharmacokinetic Natural Product-Drug Interactions.

[BibT_eX]

[DOI]

CoRR, 2022

The International Workshop on Semantics-enabled Biomedical Literature Analytics (SeBiLAn).

[BibT_eX]

[DOI]

Proceedings of the Companion of The Web Conference 2022, Virtual Event / Lyon, France, April 25, 2022

CIHLex: Complementary and Integrative Health Lexicon.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2022, 2022

Methodological information extraction from randomized controlled trial publications: a pilot study.

[BibT_eX]

[DOI]

Linh K. Hoang

Yingjun Guan

Proceedings of the AMIA 2022, 2022

2021

Toward assessing clinical trial publications for reporting transparency.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2021

Drug repurposing for COVID-19 via knowledge graph completion.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2021

Attention-Gated Graph Convolutions for Extracting Drug Interaction Information from Drug Labels.

[BibT_eX]

[DOI]

Tung Tran

ACM Trans. Comput. Heal., 2021

Discovering novel drug-supplement interactions using a dietary supplements knowledge graph generated from the biomedical literature.

[BibT_eX]

[DOI]

CoRR, 2021

UIUC_BioNLP at SemEval-2021 Task 11: A Cascade of Neural Models for Structuring Scholarly NLP Contributions.

[BibT_eX]

[DOI]

Haoyang Liu

Maria Janina Sarol

Proceedings of the 15th International Workshop on Semantic Evaluation, 2021

2020

Broad-coverage biomedical relation extraction with SemRep.

[BibT_eX]

[DOI]

BMC Bioinform., 2020

Identifying Sample Size Characteristics in Randomized Controlled Trial Publications.

[BibT_eX]

[DOI]

Linh K. Hoang

Sahil Wadhwa

Proceedings of the AMIA 2020, 2020

2019

Towards a characterization of apparent contradictions in the biomedical literature using context analysis.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2019

Confirm or refute?: A comparative study on citation sentiment classification in clinical research publications.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2019

Expanding vocabularies for complementary and alternative medicine therapies.

[BibT_eX]

[DOI]

Int. J. Medical Informatics, 2019

Attention-Gated Graph Convolution for Extracting Drugs and Their Interactions from Drug Labels.

[BibT_eX]

[DOI]

Tung Tran

CoRR, 2019

SemMedDB-neo4j: A Graph Database of Biomedical Semantic Relations.

[BibT_eX]

[DOI]

Dimitar Hristovski

Andrej Kastrin

Proceedings of the AMIA 2019, 2019

Non-Negative Matrix Factorization for Drug Repositioning: Experiments with the repoDB Dataset.

[BibT_eX]

[DOI]

Mehmet G. Bakal

Proceedings of the AMIA 2019, 2019

2018

Automatic recognition of self-acknowledged limitations in clinical research literature.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2018

Semantic annotation of consumer health questions.

[BibT_eX]

[DOI]

BMC Bioinform., 2018

Investigating the role of interleukin-1 beta and glutamate in inflammatory bowel disease and epilepsy using discovery browsing.

[BibT_eX]

[DOI]

J. Biomed. Semant., 2018

Biomedical text mining for research rigor and integrity: tasks, challenges, directions.

[BibT_eX]

[DOI]

Briefings Bioinform., 2018

A Multi-Task Learning Framework for Extracting Drugs and Their Interactions from Drug Labels.

[BibT_eX]

[DOI]

Tung Tran

Proceedings of the 2018 Text Analysis Conference, 2018

Linking Section Labels with Biomedical Relations in SemMedDB.

[BibT_eX]

[DOI]

Dongwook Shin

Proceedings of the AMIA 2018, 2018

Enhancing Identification of Relation Arguments in SemRep.

[BibT_eX]

[DOI]

Graciela Rosemblat

Dongwook Shin

Proceedings of the AMIA 2018, 2018

Methods and Tools to Enhance Rigor and Reproducibility of Biomedical Research.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2018, 2018

2017

A protocol-driven approach to automatically finding authoritative answers to consumer health questions in online resources.

[BibT_eX]

[DOI]

J. Assoc. Inf. Sci. Technol., 2017

TextFlow: A Text Similarity Measure based on Continuous Sequences.

[BibT_eX]

[DOI]

Yassine Mrabet

Proceedings of the 55th Annual Meeting of the Association for Computational Linguistics, 2017

2016

Sortal anaphora resolution to enhance relation extraction from biomedical literature.

[BibT_eX]

[DOI]

BMC Bioinform., 2016

Annotating Named Entities in Consumer Health Questions.

[BibT_eX]

[DOI]

Proceedings of the Tenth International Conference on Language Resources and Evaluation LREC 2016, 2016

Unsupervised Ranking of Knowledge Bases for Named Entity Recognition.

[BibT_eX]

[DOI]

Yassine Mrabet

Proceedings of the ECAI 2016 - 22nd European Conference on Artificial Intelligence, 29 August-2 September 2016, The Hague, The Netherlands, 2016

Inferring Implicit Causal Relationships in Biomedical Literature.

[BibT_eX]

[DOI]

Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 2016

Combining Open-domain and Biomedical Knowledge for Topic Recognition in Consumer Health Questions.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

Aligning Texts and Knowledge Bases with Semantic Sentence Simplification.

[BibT_eX]

[DOI]

Proceedings of the 2nd International Workshop on Natural Language Generation and the Semantic Web, 2016

2015

The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2015

An Ensemble Method for Spelling Correction in Consumer Health Questions.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2015, 2015

2014

Augmenting Microarray Data with Literature-Based Knowledge to Enhance Gene Regulatory Network Inference.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2014

Using semantic predications to uncover drug-drug interactions in clinical data.

[BibT_eX]

[DOI]

Serguei V. S. Pakhomov

Genevieve B. Melton

J. Biomed. Informatics, 2014

Annotating Question Decomposition on Complex Medical Questions.

[BibT_eX]

[DOI]

Proceedings of the Ninth International Conference on Language Resources and Evaluation, 2014

Decomposing Consumer Health Questions.

[BibT_eX]

[DOI]

Proceedings of BioNLP, Baltimore, Maryland, USA, 2014

Coreference Resolution for Structured Drug Product Labels.

[BibT_eX]

[DOI]

Proceedings of BioNLP, Baltimore, Maryland, USA, 2014

Automatically Classifying Question Types for Consumer Health Questions.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2014, 2014

2013

A methodology for extending domain coverage in SemRep.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2013

Interpreting Consumer Health Questions: The Role of Anaphora and Ellipsis.

[BibT_eX]

[DOI]

Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, 2013

Automatically Extracting Clinically Useful Sentences from UpToDate to Support Clinicians' Information Needs.

[BibT_eX]

[DOI]

Rashmi Mishra

Guilherme Del Fiol

Siddhartha Jonnalagadda

Proceedings of the AMIA 2013, 2013

2012

Biological event composition.

[BibT_eX]

[DOI]

BMC Bioinform., 2012

SemMedDB: a PubMed-scale repository of biomedical semantic predications.

[BibT_eX]

[DOI]

Bioinform., 2012

CLaC Labs: Processing Modality and Negation. Working Notes for QA4MRE Pilot Task at CLEF 2012.

[BibT_eX]

[DOI]

Sabine Rosenberg

Proceedings of the CLEF 2012 Evaluation Labs and Workshop, 2012

2011

Semantic MEDLINE: An advanced information management application for biomedicine.

[BibT_eX]

[DOI]

Inf. Serv. Use, 2011

Effective Bio-Event Extraction Using Trigger Words and Syntactic Dependencies.

[BibT_eX]

[DOI]

Comput. Intell., 2011

Constructing a semantic predication gold standard from the biomedical literature.

[BibT_eX]

[DOI]

BMC Bioinform., 2011

U-Compare bio-event meta-service: compatible BioNLP event extraction services.

[BibT_eX]

[DOI]

BMC Bioinform., 2011

Adapting a General Semantic Interpretation Approach to Biological Event Extraction.

[BibT_eX]

[DOI]

Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

2010

Adapting semantic natural language processing technology to address information overload in influenza epidemic management.

[BibT_eX]

[DOI]

J. Assoc. Inf. Sci. Technol., 2010

Combining Relevance Assignment with Quality of the Evidence to Support Guideline Development.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2010, 2010

A High-Precision Approach to Detecting Hedges and their Scopes.

[BibT_eX]

[DOI]

Proceedings of the Fourteenth Conference on Computational Natural Language Learning: Shared Task, 2010

Arguments of Nominals in Semantic Interpretation of Biomedical Text.

[BibT_eX]

[DOI]

Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010

2009

Automatic summarization of MEDLINE citations for evidence-based medical treatment: A topic-oriented evaluation.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2009

Viewpoint Paper: Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2009

Syntactic Dependency Based Heuristics for Biological Event Extraction.

[BibT_eX]

[DOI]

Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009

2008

Recognizing speculative language in biomedical research articles: a linguistically motivated perspective.

[BibT_eX]

[DOI]

BMC Bioinform., 2008

Toward Automatic Recognition of High Quality Clinical Evidence.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2008, 2008

2007

Using the Literature-Based Discovery Paradigm to Investigate Drug Mechanisms.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2007, 2007

2006

Word sense disambiguation by selecting the best semantic type based on Journal Descriptor Indexing: Preliminary experiment.

[BibT_eX]

[DOI]

J. Assoc. Inf. Sci. Technol., 2006

Argument-predicate distance as a filter for enhancing precision in extracting predications on the genetic etiology of disease.

[BibT_eX]

[DOI]

BMC Bioinform., 2006

Summarizing Drug Information in Medline Citations.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2006, 2006

2005

Medical Facts to Support Inferencing in Natural Language Processing.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2005, 2005

2004

Summarization of an Online Medical Encyclopedia.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2004, 2004

2003

Semantic Relations Asserting the Etiology of Genetic Diseases.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2003, 2003

Interpreting Hypernymic Propositions in an Online Medical Encyclopedia.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2003, 2003

Integrating a Hypernymic Proposition Interpreter into a Semantic Processor for Biomedical Texts.

[BibT_eX]

[DOI]