Halil Kilicoglu

According to our database1, Halil Kilicoglu authored at least 55 papers between 2003 and 2019.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.



In proceedings 
PhD thesis 


On csauthors.net:


Confirm or refute?: A comparative study on citation sentiment classification in clinical research publications.
Journal of Biomedical Informatics, 2019

Expanding vocabularies for complementary and alternative medicine therapies.
I. J. Medical Informatics, 2019

Automatic recognition of self-acknowledged limitations in clinical research literature.
JAMIA, 2018

Semantic annotation of consumer health questions.
BMC Bioinformatics, 2018

Investigating the role of interleukin-1 beta and glutamate in inflammatory bowel disease and epilepsy using discovery browsing.
J. Biomedical Semantics, 2018

Biomedical text mining for research rigor and integrity: tasks, challenges, directions.
Briefings in Bioinformatics, 2018

A Multi-Task Learning Framework for Extracting Drugs and Their Interactions from Drug Labels.
Proceedings of the 2018 Text Analysis Conference, 2018

Linking Section Labels with Biomedical Relations in SemMedDB.
Proceedings of the AMIA 2018, 2018

Enhancing Identification of Relation Arguments in SemRep.
Proceedings of the AMIA 2018, 2018

Methods and Tools to Enhance Rigor and Reproducibility of Biomedical Research.
Proceedings of the AMIA 2018, 2018

A protocol-driven approach to automatically finding authoritative answers to consumer health questions in online resources.
JASIST, 2017

TextFlow: A Text Similarity Measure based on Continuous Sequences.
Proceedings of the 55th Annual Meeting of the Association for Computational Linguistics, 2017

Sortal anaphora resolution to enhance relation extraction from biomedical literature.
BMC Bioinformatics, 2016

Annotating Named Entities in Consumer Health Questions.
Proceedings of the Tenth International Conference on Language Resources and Evaluation LREC 2016, 2016

Unsupervised Ranking of Knowledge Bases for Named Entity Recognition.
Proceedings of the ECAI 2016 - 22nd European Conference on Artificial Intelligence, 29 August-2 September 2016, The Hague, The Netherlands, 2016

Inferring Implicit Causal Relationships in Biomedical Literature.
Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 2016

Combining Open-domain and Biomedical Knowledge for Topic Recognition in Consumer Health Questions.
Proceedings of the AMIA 2016, 2016

Aligning Texts and Knowledge Bases with Semantic Sentence Simplification.
Proceedings of the 2nd International Workshop on Natural Language Generation and the Semantic Web, 2016

The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs.
Journal of Biomedical Informatics, 2015

An Ensemble Method for Spelling Correction in Consumer Health Questions.
Proceedings of the AMIA 2015, 2015

Augmenting Microarray Data with Literature-Based Knowledge to Enhance Gene Regulatory Network Inference.
PLoS Computational Biology, 2014

Using semantic predications to uncover drug-drug interactions in clinical data.
Journal of Biomedical Informatics, 2014

Annotating Question Decomposition on Complex Medical Questions.
Proceedings of the Ninth International Conference on Language Resources and Evaluation, 2014

Decomposing Consumer Health Questions.
Proceedings of BioNLP, Baltimore, Maryland, USA, 2014

Coreference Resolution for Structured Drug Product Labels.
Proceedings of BioNLP, Baltimore, Maryland, USA, 2014

Automatically Classifying Question Types for Consumer Health Questions.
Proceedings of the AMIA 2014, 2014

A methodology for extending domain coverage in SemRep.
Journal of Biomedical Informatics, 2013

Interpreting Consumer Health Questions: The Role of Anaphora and Ellipsis.
Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, 2013

Automatically Extracting Clinically Useful Sentences from UpToDate to Support Clinicians' Information Needs.
Proceedings of the AMIA 2013, 2013

Biological event composition.
BMC Bioinformatics, 2012

SemMedDB: a PubMed-scale repository of biomedical semantic predications.
Bioinformatics, 2012

CLaC Labs: Processing Modality and Negation. Working Notes for QA4MRE Pilot Task at CLEF 2012.
Proceedings of the CLEF 2012 Evaluation Labs and Workshop, 2012

Semantic MEDLINE: An advanced information management application for biomedicine.
Inf. Services and Use, 2011

Effective Bio-Event Extraction Using Trigger Words and Syntactic Dependencies.
Computational Intelligence, 2011

Constructing a semantic predication gold standard from the biomedical literature.
BMC Bioinformatics, 2011

U-Compare bio-event meta-service: compatible BioNLP event extraction services.
BMC Bioinformatics, 2011

Adapting a General Semantic Interpretation Approach to Biological Event Extraction.
Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

Adapting semantic natural language processing technology to address information overload in influenza epidemic management.
JASIST, 2010

Combining Relevance Assignment with Quality of the Evidence to Support Guideline Development.
Proceedings of the MEDINFO 2010, 2010

A High-Precision Approach to Detecting Hedges and their Scopes.
Proceedings of the Fourteenth Conference on Computational Natural Language Learning: Shared Task, 2010

Arguments of Nominals in Semantic Interpretation of Biomedical Text.
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010

Automatic summarization of MEDLINE citations for evidence-based medical treatment: A topic-oriented evaluation.
Journal of Biomedical Informatics, 2009

Viewpoint Paper: Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence.
JAMIA, 2009

Syntactic Dependency Based Heuristics for Biological Event Extraction.
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009

Recognizing Speculative Language in Biomedical Research Articles: A Linguistically Motivated Perspective.
Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, 2008

Toward Automatic Recognition of High Quality Clinical Evidence.
Proceedings of the AMIA 2008, 2008

Using the Literature-Based Discovery Paradigm to Investigate Drug Mechanisms.
Proceedings of the AMIA 2007, 2007

Word sense disambiguation by selecting the best semantic type based on Journal Descriptor Indexing: Preliminary experiment.
JASIST, 2006

Argument-predicate distance as a filter for enhancing precision in extracting predications on the genetic etiology of disease.
BMC Bioinformatics, 2006

Summarizing Drug Information in Medline Citations.
Proceedings of the AMIA 2006, 2006

Medical Facts to Support Inferencing in Natural Language Processing.
Proceedings of the AMIA 2005, 2005

Summarization of an Online Medical Encyclopedia.
Proceedings of the MEDINFO 2004, 2004

Semantic Relations Asserting the Etiology of Genetic Diseases.
Proceedings of the AMIA 2003, 2003

Interpreting Hypernymic Propositions in an Online Medical Encyclopedia.
Proceedings of the AMIA 2003, 2003

Integrating a Hypernymic Proposition Interpreter into a Semantic Processor for Biomedical Texts.
Proceedings of the AMIA 2003, 2003