Siyuan Li
Orcid: 0000-0001-6806-2468Affiliations:
- Westlake University, School of Engineering, Hangzhou, China
- Alibaba Group (China), Hangzhou, China (former)
- Nanjing University, Department of Computer Science and Technology, China (former)
  According to our database1,
  Siyuan Li
  authored at least 95 papers
  between 2020 and 2025.
  
  
Collaborative distances:
Collaborative distances:
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Online presence:
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    on orcid.org
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Bibliography
  2025
ResearchPulse: Building Method-Experiment Chains through Multi-Document Scientific Inference.
    
  
    CoRR, September, 2025
    
  
    IEEE Trans. Pattern Anal. Mach. Intell., August, 2025
    
  
Rep-MTL: Unleashing the Power of Representation-level Task Saliency for Multi-Task Learning.
    
  
    CoRR, July, 2025
    
  
TrinityDNA: A Bio-Inspired Foundational Model for Efficient Long-Sequence DNA Modeling.
    
  
    CoRR, July, 2025
    
  
Unlasting: Unpaired Single-Cell Multi-Perturbation Estimation by Dual Conditional Diffusion Implicit Bridges.
    
  
    CoRR, June, 2025
    
  
    CoRR, February, 2025
    
  
    IEEE Trans. Neural Networks Learn. Syst., January, 2025
    
  
    IEEE Trans. Multim., 2025
    
  
    Proceedings of the Thirty-Fourth International Joint Conference on Artificial Intelligence, 2025
    
  
Towards Homogeneous Lexical Tone Decoding from Heterogeneous Intracranial Recordings.
    
  
    Proceedings of the Thirteenth International Conference on Learning Representations, 2025
    
  
MeToken: Uniform Micro-environment Token Boosts Post-Translational Modification Prediction.
    
  
    Proceedings of the Thirteenth International Conference on Learning Representations, 2025
    
  
    Proceedings of the Thirteenth International Conference on Learning Representations, 2025
    
  
From Words to Structured Visuals: A Benchmark and Framework for Text-to-Diagram Generation and Editing.
    
  
    Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2025
    
  
MergeVQ: A Unified Framework for Visual Generation and Representation with Disentangled Token Merging and Quantization.
    
  
    Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2025
    
  
    Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2025
    
  
    Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2025
    
  
  2024
    IEEE Trans. Knowl. Data Eng., December, 2024
    
  
Enhancing human-like multimodal reasoning: a new challenging dataset and comprehensive framework.
    
  
    Neural Comput. Appl., November, 2024
    
  
    IEEE Trans. Knowl. Data Eng., February, 2024
    
  
    CoRR, 2024
    
  
    CoRR, 2024
    
  
GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models.
    
  
    CoRR, 2024
    
  
Retrieval Meets Reasoning: Even High-school Textbook Knowledge Benefits Multimodal Reasoning.
    
  
    CoRR, 2024
    
  
Learning to Predict Mutation Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt Learning.
    
  
    CoRR, 2024
    
  
    CoRR, 2024
    
  
    Briefings Bioinform., 2024
    
  
    Briefings Bioinform., 2024
    
  
    Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2024, 2024
    
  
PhyloGen: Language Model-Enhanced Phylogenetic Inference via Graph Structure Generation.
    
  
    Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2024, 2024
    
  
    Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2024, 2024
    
  
    Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2024, 2024
    
  
    Proceedings of the Thirty-Third International Joint Conference on Artificial Intelligence, 2024
    
  
Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt Learning.
    
  
    Proceedings of the Forty-first International Conference on Machine Learning, 2024
    
  
VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling.
    
  
    Proceedings of the Forty-first International Conference on Machine Learning, 2024
    
  
Short-Long Convolutions Help Hardware-Efficient Linear Attention to Focus on Long Sequences.
    
  
    Proceedings of the Forty-first International Conference on Machine Learning, 2024
    
  
    Proceedings of the Forty-first International Conference on Machine Learning, 2024
    
  
MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding.
    
  
    Proceedings of the Twelfth International Conference on Learning Representations, 2024
    
  
    Proceedings of the Twelfth International Conference on Learning Representations, 2024
    
  
    Proceedings of the Twelfth International Conference on Learning Representations, 2024
    
  
    Proceedings of the Twelfth International Conference on Learning Representations, 2024
    
  
RDesign: Hierarchical Data-efficient Representation Learning for Tertiary Structure-based RNA Design.
    
  
    Proceedings of the Twelfth International Conference on Learning Representations, 2024
    
  
Boosting the Power of Small Multimodal Reasoning Models to Match Larger Models with Self-consistency Training.
    
  
    Proceedings of the Computer Vision - ECCV 2024, 2024
    
  
FaceChain-ImagineID: Freely Crafting High-Fidelity Diverse Talking Faces from Disentangled Audio.
    
  
    Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2024
    
  
Wavelet-Driven Spatiotemporal Predictive Learning: Bridging Frequency and Time Variations.
    
  
    Proceedings of the Thirty-Eighth AAAI Conference on Artificial Intelligence, 2024
    
  
Protein 3D Graph Structure Learning for Robust Structure-Based Protein Property Prediction.
    
  
    Proceedings of the Thirty-Eighth AAAI Conference on Artificial Intelligence, 2024
    
  
  2023
Boosting the Power of Small Multimodal Reasoning Models to Match Larger Models with Self-Consistency Training.
    
  
    CoRR, 2023
    
  
Protein 3D Graph Structure Learning for Robust Structure-based Protein Property Prediction.
    
  
    CoRR, 2023
    
  
Revisiting the Temporal Modeling in Spatio-Temporal Predictive Learning under A Unified View.
    
  
    CoRR, 2023
    
  
Enhancing Human-like Multi-Modal Reasoning: A New Challenging Dataset and Comprehensive Framework.
    
  
    CoRR, 2023
    
  
Functional-Group-Based Diffusion for Pocket-Specific Molecule Generation and Elaboration.
    
  
    CoRR, 2023
    
  
InstructBio: A Large-scale Semi-supervised Learning Paradigm for Biochemical Problems.
    
  
    CoRR, 2023
    
  
Understanding the Limitations of Deep Models for Molecular property prediction: Insights and Solutions.
    
  
    Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023
    
  
Functional-Group-Based Diffusion for Pocket-Specific Molecule Generation and Elaboration.
    
  
    Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023
    
  
    Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023
    
  
    Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023
    
  
    Proceedings of the International Conference on Machine Learning, 2023
    
  
    Proceedings of the International Conference on Machine Learning, 2023
    
  
    Proceedings of the Eleventh International Conference on Learning Representations, 2023
    
  
CVT-SLR: Contrastive Visual-Textual Transformation for Sign Language Recognition with Variational Alignment.
    
  
    Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2023
    
  
    Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2023
    
  
  2022
Leveraging Graph-based Cross-modal Information Fusion for Neural Sign Language Translation.
    
  
    CoRR, 2022
    
  
    CoRR, 2022
    
  
UDRN: Unified Dimensional Reduction Neural Network for Feature Selection and Feature Projection.
    
  
    CoRR, 2022
    
  
    CoRR, 2022
    
  
Discovering the Representation Bottleneck of Graph Neural Networks from Multi-order Interactions.
    
  
    CoRR, 2022
    
  
neuro2vec: Masked Fourier Spectrum Prediction for Neurophysiological Representation Learning.
    
  
    CoRR, 2022
    
  
Generalized Clustering and Multi-Manifold Learning with Geometric Structure Preservation.
    
  
    Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 2022
    
  
    Proceedings of the Computer Vision - ECCV 2022, 2022
    
  
    Proceedings of the Computer Vision, 2022
    
  
    Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2022
    
  
    Proceedings of the 31st ACM International Conference on Information & Knowledge Management, 2022
    
  
    Proceedings of the 33rd British Machine Vision Conference 2022, 2022
    
  
  2021
    CoRR, 2021
    
  
Align Yourself: Self-supervised Pre-training for Fine-grained Recognition via Saliency Alignment.
    
  
    CoRR, 2021
    
  
    Proceedings of the Machine Learning and Knowledge Discovery in Databases. Research Track, 2021
    
  
  2020
    CoRR, 2020
    
  
TLPG-Tracker: Joint Learning of Target Localization and Proposal Generation for Visual Tracking.
    
  
    Proceedings of the Twenty-Ninth International Joint Conference on Artificial Intelligence, 2020