Songnian Hu

Affiliations:
  • King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
  • Chinese Academy of Sciences, Beijing Institute of Genomics, China


According to our database1, Songnian Hu authored at least 41 papers between 2008 and 2022.

Collaborative distances:

Timeline

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Bibliography

2022
VarEPS: an evaluation and prewarning system of known and virtual variations of SARS-CoV-2 genomes.
Nucleic Acids Res., 2022

Genome of the Giant Panda Roundworm Illuminates Its Host Shift and Parasitic Adaptation.
Genom. Proteom. Bioinform., 2022

2021
Selection for Cheaper Amino Acids Drives Nucleotide Usage at the Start of Translation in Eukaryotic Genes.
Genom. Proteom. Bioinform., 2021

2020
IC4R-2.0: Rice Genome Reannotation Using Massive RNA-seq Data.
Genom. Proteom. Bioinform., 2020

Genome Assembly and Pathway Analysis of Edible Mushroom <i>Agrocybe cylindracea</i>.
Genom. Proteom. Bioinform., 2020

2019
Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees.
Nucleic Acids Res., 2019

Editome Disease Knowledgebase (EDK): a curated knowledgebase of editome-disease associations in human.
Nucleic Acids Res., 2019

Plant editosome database: a curated database of RNA editosome in plants.
Nucleic Acids Res., 2019

2018
ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization.
Nucleic Acids Res., 2018

MVP: a microbe-phage interaction database.
Nucleic Acids Res., 2018

REDO: RNA Editing Detection in Plant Organelles Based on Variant Calling Results.
J. Comput. Biol., 2018

Rice Genomics: over the Past Two Decades and into the Future.
Genom. Proteom. Bioinform., 2018

RGAAT: A Reference-based Genome Assembly and Annotation Tool for New Genomes and Upgrade of Known Genomes.
Genom. Proteom. Bioinform., 2018

2017
CYP2A6 Polymorphisms Associate with Outcomes of S-1 Plus Oxaliplatin Chemotherapy in Chinese Gastric Cancer Patients.
Genom. Proteom. Bioinform., 2017

ISVASE: identification of sequence variant associated with splicing event using RNA-seq data.
BMC Bioinform., 2017

2016
Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees.
Nucleic Acids Res., 2016

2015
Long Non-coding RNAs and Their Biological Roles in Plants.
Genom. Proteom. Bioinform., 2015

2014
RiceWiki: a wiki-based database for community curation of rice genes.
Nucleic Acids Res., 2014

Adolescent Mouse Takes on An Active Transcriptomic Expression During Postnatal Cerebral Development.
Genom. Proteom. Bioinform., 2014

Characterization of miRNomes in Acute and Chronic Myeloid Leukemia Cell Lines.
Genom. Proteom. Bioinform., 2014

Ribogenomics: the Science and Knowledge of RNA.
Genom. Proteom. Bioinform., 2014

A Comprehensive Transcriptomic Analysis of Infant and Adult Mouse Ovary.
Genom. Proteom. Bioinform., 2014

2012
EvolView, an online tool for visualizing, annotating and managing phylogenetic trees.
Nucleic Acids Res., 2012

Strand-biased Gene Distribution in Bacteria Is Related to both Horizontal Gene Transfer and Strand-biased Nucleotide Composition.
Genom. Proteom. Bioinform., 2012

An RNA-seq-based Gene Expression Profiling of Radiation-induced Tumorigenic Mammary Epithelial Cells.
Genom. Proteom. Bioinform., 2012

Comparative Analyses of H3K4 and H3K27 Trimethylations Between the Mouse Cerebrum and Testis.
Genom. Proteom. Bioinform., 2012

The Association Between H3K4me3 and Antisense Transcription.
Genom. Proteom. Bioinform., 2012

The Transcript-centric Mutations in Human Genomes.
Genom. Proteom. Bioinform., 2012

Distinct Contributions of Replication and Transcription to Mutation Rate Variation of Human Genomes.
Genom. Proteom. Bioinform., 2012

2011
BIGpre: A Quality Assessment Package for Next-Generation Sequencing Data.
Genom. Proteom. Bioinform., 2011

EST-Based Identification of Genes Expressed in Skeletal Muscle of the Mandarin Fish (Siniperca chuatsi).
Genom. Proteom. Bioinform., 2011

wapRNA: a web-based application for the processing of RNA sequences.
Bioinform., 2011

2010
Characterization of Evolutionarily Conserved MicroRNAs in Amphioxus.
Genom. Proteom. Bioinform., 2010

Discovery, Identification and Comparative Analysis of Non-Specific Lipid Transfer Protein (nsLtp) Family in Solanaceae.
Genom. Proteom. Bioinform., 2010

The Most Redundant Sequences in Human CpG Island Library Are Derived from Mitochondrial Genome.
Genom. Proteom. Bioinform., 2010

A Modified Enrichment Method to Construct Microsatellite Library from Plateau Pika Genome (Ochotona curzoniae).
Genom. Proteom. Bioinform., 2010

Sequence Signatures of Nucleosome Positioning in Caenorhabditis elegans.
Genom. Proteom. Bioinform., 2010

2009
Screening and Assessing 11 Mycobacterium tuberculosis Proteins as Potential Serodiagnostical Markers for Discriminating TB Patients from BCG Vaccinees.
Genom. Proteom. Bioinform., 2009

How Do Variable Substitution Rates Influence Ka and Ks Calculations?
Genom. Proteom. Bioinform., 2009

A Brief Review on the Mechanisms of miRNA Regulation.
Genom. Proteom. Bioinform., 2009

2008
Phylogenetic Analysis of Brine Shrimp (Artemia) in China Using DNA Barcoding.
Genom. Proteom. Bioinform., 2008


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