Stephen M. Smith

According to our database, Stephen M. Smith authored at least 159 papers between 1992 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

ICAM-Reg: Interpretable Classification and Regression With Feature Attribution for Mapping Neurological Phenotypes in Individual Scans.

Cher Bass, Mariana da Silva, Carole H. Sudre, Logan Z. J. Williams, Helena S. Sousa, Petru-Daniel Tudosiu, Fidel Alfaro-Almagro, Sean P. Fitzgibbon, Matthew F. Glasser, Stephen M. Smith, Emma C. Robinson

IEEE Trans. Medical Imaging, April, 2023

Supervised Phenotype Discovery From Multimodal Brain Imaging.

Weikang Gong, Song Bai, Ying-Qiu Zheng, Stephen M. Smith, Christian F. Beckmann

IEEE Trans. Medical Imaging, March, 2023

Amplitudes of resting-state functional networks - investigation into their correlates and biophysical properties.

Soojin Lee, Janine D. Bijsterbosch, Fidel Alfaro-Almagro, Lloyd T. Elliott, Paul McCarthy, Bernd Taschler, Roser Sala-Llonch, Christian F. Beckmann, Eugene P. Duff, Stephen M. Smith, Gwenaëlle Douaud

NeuroImage, 2023

Brain Ages Derived from Different MRI Modalities are Associated with Distinct Biological Phenotypes.

Andrei Claudiu Roibu, Stanislaw Adaszewski, Torsten Schindler, Stephen M. Smith, Ana I. L. Namburete, Frederik J. Lange

Proceedings of the 10th IEEE Swiss Conference on Data Science, 2023

A Transfer Learning Approach to Localising a Deep Brain Stimulation Target.

Ying-Qiu Zheng, Harith Akram, Stephen M. Smith, Saâd Jbabdi

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

2022

Accurate predictions of individual differences in task-evoked brain activity from resting-state fMRI using a sparse ensemble learner.

Ying-Qiu Zheng, Seyedeh-Rezvan Farahibozorg, Weikang Gong, Hossein Rafipoor, Saâd Jbabdi, Stephen M. Smith

NeuroImage, 2022

Causal inference on neuroimaging data with Mendelian randomisation.

Bernd Taschler, Stephen M. Smith, Thomas E. Nichols

NeuroImage, 2022

Deep neural networks learn general and clinically relevant representations of the ageing brain.

Esten H. Leonardsen, Han Peng, Tobias Kaufmann, Ingrid Agartz, Ole A. Andreassen, Elisabeth Gulowsen Celius, Thomas Espeseth, Hanne F. Harbo, Einar A. Høgestøl, Ann-Marie G. de Lange, Andre F. Marquand, Dídac Vidal-Piñeiro, James M. Roe, Geir Selbæk, Øystein Sørensen, Stephen M. Smith, Lars T. Westlye, Thomas Wolfers, Yunpeng Wang

NeuroImage, 2022

Multi-dynamic modelling reveals strongly time-varying resting fMRI correlations.

Usama Pervaiz, Diego Vidaurre, Chetan Gohil, Stephen M. Smith, Mark W. Woolrich

Medical Image Anal., 2022

2021

Behavioural relevance of spontaneous, transient brain network interactions in fMRI.

Diego Vidaurre, Alberto Llera, Stephen M. Smith, Mark W. Woolrich

NeuroImage, 2021

The nonhuman primate neuroimaging and neuroanatomy project.

Takuya Hayashi, Yujie Hou, Matthew F. Glasser, Joonas A. A. Autio, Kenneth Knoblauch, Miho Inoue-Murayama, Timothy S. Coalson, Essa Yacoub, Stephen M. Smith, Henry Kennedy, David C. Van Essen

NeuroImage, 2021

Hierarchical modelling of functional brain networks in population and individuals from big fMRI data.

Seyedeh-Rezvan Farahibozorg, Janine D. Bijsterbosch, Weikang Gong, Saâd Jbabdi, Stephen M. Smith, Samuel J. Harrison, Mark W. Woolrich

NeuroImage, 2021

The Human Connectome Project: A retrospective.

Jennifer Stine Elam, Matthew F. Glasser, Michael P. Harms, Stamatios N. Sotiropoulos, Jesper L. R. Andersson, Gregory C. Burgess, Sandra W. Curtiss, Robert Oostenveld, Linda J. Larson-Prior, Jan-Mathijs Schoffelen, Michael R. Hodge, Eileen A. Cler, Daniel M. Marcus, Deanna M. Barch, Essa Yacoub, Stephen M. Smith, Kâmil Ugurbil, David C. Van Essen

NeuroImage, 2021

Learning patterns of the ageing brain in MRI using deep convolutional networks.

Nicola K. Dinsdale, Emma Bluemke, Stephen M. Smith, Zobair Arya, Diego Vidaurre, Mark Jenkinson, Ana I. L. Namburete

NeuroImage, 2021

Confound modelling in UK Biobank brain imaging.

Fidel Alfaro-Almagro, Paul McCarthy, Soroosh Afyouni, Jesper L. R. Andersson, Matteo Bastiani, Karla L. Miller, Thomas E. Nichols, Stephen M. Smith

NeuroImage, 2021

Accurate brain age prediction with lightweight deep neural networks.

Han Peng, Weikang Gong, Christian F. Beckmann, Andrea Vedaldi, Stephen M. Smith

Medical Image Anal., 2021

Phenotype discovery from population brain imaging.

Weikang Gong, Christian F. Beckmann, Stephen M. Smith

Medical Image Anal., 2021

Challenges for machine learning in clinical translation of big data imaging studies.

Nicola K. Dinsdale, Emma Bluemke, Vaanathi Sundaresan, Mark Jenkinson, Stephen M. Smith, Ana I. L. Namburete

CoRR, 2021

ICAM-reg: Interpretable Classification and Regression with Feature Attribution for Mapping Neurological Phenotypes in Individual Scans.

Cher Bass, Mariana da Silva, Carole H. Sudre, Logan Z. J. Williams, Petru-Daniel Tudosiu, Fidel Alfaro-Almagro, Sean P. Fitzgibbon, Matthew F. Glasser, Stephen M. Smith, Emma C. Robinson

CoRR, 2021

2020

Permutation inference for canonical correlation analysis.

Anderson M. Winkler, Olivier Renaud, Stephen M. Smith, Thomas E. Nichols

NeuroImage, 2020

Optimising network modelling methods for fMRI.

Usama Pervaiz, Diego Vidaurre, Mark W. Woolrich, Stephen M. Smith

NeuroImage, 2020

Denoising scanner effects from multimodal MRI data using linked independent component analysis.

Huanjie Li, Stephen M. Smith, Staci Gruber, Scott E. Lukas, Marisa M. Silveri, Kevin P. Hill, William D. S. Killgore, Lisa D. H. Nickerson

NeuroImage, 2020

A Symmetric Prior for the Regularisation of Elastic Deformations: Improved anatomical plausibility in nonlinear image registration.

Frederik J. Lange, John Ashburner, Stephen M. Smith, Jesper L. R. Andersson

NeuroImage, 2020

Modelling subject variability in the spatial and temporal characteristics of functional modes.

Samuel J. Harrison, Janine D. Bijsterbosch, Andrew R. Segerdahl, Sean P. Fitzgibbon, Seyedeh-Rezvan Farahibozorg, Eugene P. Duff, Stephen M. Smith, Mark W. Woolrich

NeuroImage, 2020

Multimodal MRI Template Creation in the Ring-Tailed Lemur and Rhesus Macaque.

Frederik J. Lange, Stephen M. Smith, Mads F. Bertelsen, Alexandre A. Khrapitchev, Paul R. Manger, Rogier B. Mars, Jesper L. R. Andersson

Proceedings of the Biomedical Image Registration - 9th International Workshop, 2020

ICAM: Interpretable Classification via Disentangled Representations and Feature Attribution Mapping.

Cher Bass, Mariana da Silva, Carole H. Sudre, Petru-Daniel Tudosiu, Stephen M. Smith, Emma C. Robinson

Proceedings of the Advances in Neural Information Processing Systems 33: Annual Conference on Neural Information Processing Systems 2020, 2020

2019

Probabilistic TFCE: A generalized combination of cluster size and voxel intensity to increase statistical power.

Tamás Spisák, Zsófia Spisák, Matthias Zunhammer, Ulrike Bingel, Stephen M. Smith, Thomas E. Nichols, Zsigmond Tamás Kincses

NeuroImage, 2019

Estimation of brain age delta from brain imaging.

Stephen M. Smith, Diego Vidaurre, Fidel Alfaro-Almagro, Thomas E. Nichols, Karla L. Miller

NeuroImage, 2019

Using GPUs to accelerate computational diffusion MRI: From microstructure estimation to tractography and connectomes.

Moisés Hernández-Fernández, István Zoltan Reguly, Saâd Jbabdi, Michael B. Giles, Stephen M. Smith, Stamatios N. Sotiropoulos

NeuroImage, 2019

Classification of temporal ICA components for separating global noise from fMRI data: Reply to Power.

Matthew F. Glasser, Timothy S. Coalson, Janine D. Bijsterbosch, Samuel J. Harrison, Michael P. Harms, Alan Anticevic, David C. Van Essen, Stephen M. Smith

NeuroImage, 2019

Optimising neonatal fMRI data analysis: Design and validation of an extended dHCP preprocessing pipeline to characterise noxious-evoked brain activity in infants.

Luke Baxter, Sean P. Fitzgibbon, Fiona Moultrie, Sezgi Goksan, Mark Jenkinson, Stephen M. Smith, Jesper L. R. Andersson, Eugene P. Duff, Rebeccah Slater

NeuroImage, 2019

Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project.

Matteo Bastiani, Jesper L. R. Andersson, Lucilio Cordero-Grande, Maria Murgasova, Jana Hutter, Anthony N. Price, Antonios Makropoulos, Sean P. Fitzgibbon, Emer J. Hughes, Daniel Rueckert, Suresh Victor, Mary A. Rutherford, A. David Edwards, Stephen M. Smith, Jacques-Donald Tournier, Joseph V. Hajnal, Saâd Jbabdi, Stamatios N. Sotiropoulos

NeuroImage, 2019

Effective degrees of freedom of the Pearson's correlation coefficient under autocorrelation.

Soroosh Afyouni, Stephen M. Smith, Thomas E. Nichols

NeuroImage, 2019

Towards algorithmic analytics for large-scale datasets.

Danilo Bzdok, Thomas E. Nichols, Stephen M. Smith

Nat. Mach. Intell., 2019

2018

Discovering dynamic brain networks from big data in rest and task.

Diego Vidaurre, Romesh G. Abeysuriya, Robert Becker, Andrew J. Quinn, Fidel Alfaro-Almagro, Stephen M. Smith, Mark W. Woolrich

NeuroImage, 2018

The Lifespan Human Connectome Project in Development: A large-scale study of brain connectivity development in 5-21 year olds.

Leah H. Somerville, Susan Y. Bookheimer, Randy L. Buckner, Gregory C. Burgess, Sandra W. Curtiss, Mirella Dapretto, Jennifer Stine Elam, Michael S. Gaffrey, Michael P. Harms, Cynthia Hodge, Sridhar Kandala, Erik K. Kastman, Thomas E. Nichols, Bradley L. Schlaggar, Stephen M. Smith, Kathleen M. Thomas, Essa Yacoub, David C. Van Essen, Deanna M. Barch

NeuroImage, 2018

Directed functional connectivity using dynamic graphical models.

Simon Schwab, Ruth Harbord, Valerio Zerbi, Lloyd T. Elliott, Soroosh Afyouni, Jim Q. Smith, Mark W. Woolrich, Stephen M. Smith, Thomas E. Nichols

NeuroImage, 2018

Multimodal surface matching with higher-order smoothness constraints.

Emma C. Robinson, Kara Garcia, Matthew F. Glasser, Zhengdao Chen, Timothy S. Coalson, Antonios Makropoulos, Jelena Bozek, Robert Wright, Andreas Schuh, Matthew A. Webster, Jana Hutter, Anthony Price, Lucilio Cordero-Grande, Emer J. Hughes, Nora Tusor, Philip V. Bayly, David C. Van Essen, Stephen M. Smith, Daniel Rueckert

NeuroImage, 2018

Using temporal ICA to selectively remove global noise while preserving global signal in functional MRI data.

Matthew F. Glasser, Timothy S. Coalson, Janine D. Bijsterbosch, Samuel J. Harrison, Michael P. Harms, Alan Anticevic, David C. Van Essen, Stephen M. Smith

NeuroImage, 2018

Disambiguating brain functional connectivity.

Eugene P. Duff, Tamar R. Makin, Michiel Cottaar, Stephen M. Smith, Mark W. Woolrich

NeuroImage, 2018

Multi-subject hierarchical inverse covariance modelling improves estimation of functional brain networks.

Giles L. Colclough, Mark W. Woolrich, Samuel J. Harrison, Pedro A. Rojas-Lopez, Pedro A. Valdés-Sosa, Stephen M. Smith

NeuroImage, 2018

Image processing and Quality Control for the first 10, 000 brain imaging datasets from UK Biobank.

Fidel Alfaro-Almagro, Mark Jenkinson, Neal K. Bangerter, Jesper L. R. Andersson, Ludovica Griffanti, Gwenaëlle Douaud, Stamatios N. Sotiropoulos, Saâd Jbabdi, Moisés Hernández-Fernández, Emmanuel Vallée, Diego Vidaurre, Matthew A. Webster, Paul McCarthy, Christopher Rorden, Alessandro Daducci, Daniel C. Alexander, Hui Zhang, Iulius Dragonu, Paul M. Matthews, Karla L. Miller, Stephen M. Smith

NeuroImage, 2018

A Machine Learning Approach to Diffusion MRI Partial Volume Estimation.

Emmanuel Vallée, Wenchuan Wu, Francesca Galassi, Saâd Jbabdi, Stephen M. Smith

Proceedings of the Simulation and Synthesis in Medical Imaging, 2018

2017

Tradeoffs in pushing the spatial resolution of fMRI for the 7T Human Connectome Project.

An T. Vu, Keith Jamison, Matthew F. Glasser, Stephen M. Smith, Timothy S. Coalson, Steen Moeller, Edward J. Auerbach, Kâmil Ugurbil, Essa Yacoub

NeuroImage, 2017

Distinct resting-state functional connections associated with episodic and visuospatial memory in older adults.

Sana Suri, Anya Topiwala, Nicola Filippini, Eniko Zsoldos, Abda Mahmood, Claire E. Sexton, Archana Singh-Manoux, Mika Kivimäki, Clare E. Mackay, Stephen M. Smith, Klaus P. Ebmeier

NeuroImage, 2017

Heterogeneous fractionation profiles of meta-analytic coactivation networks.

Angela R. Laird, Michael C. Riedel, Mershack Okoe, Radu Jianu, Kimberly L. Ray, Simon B. Eickhoff, Stephen M. Smith, Peter T. Fox, Matthew T. Sutherland

NeuroImage, 2017

Hand classification of fMRI ICA noise components.

Ludovica Griffanti, Gwenaëlle Douaud, Janine D. Bijsterbosch, Stefania Evangelisti, Fidel Alfaro-Almagro, Matthew F. Glasser, Eugene P. Duff, Sean P. Fitzgibbon, Robert Westphal, Davide Carone, Christian F. Beckmann, Stephen M. Smith

NeuroImage, 2017

Investigations into within- and between-subject resting-state amplitude variations.

Janine Bijsterbosch, Samuel J. Harrison, Eugene P. Duff, Fidel Alfaro-Almagro, Mark W. Woolrich, Stephen M. Smith

NeuroImage, 2017

2016

Faster permutation inference in brain imaging.

Anderson M. Winkler, Gerard R. Ridgway, Gwenaëlle Douaud, Thomas E. Nichols, Stephen M. Smith

NeuroImage, 2016

The brain functional connectome is robustly altered by lack of sleep.

Tobias Kaufmann, Torbjørn Elvsåshagen, Dag Alnæs, Nathalia Zak, Per Ø. Pedersen, Linn B. Norbom, Sophia H. Quraishi, Enzo Tagliazucchi, Helmut Laufs, Atle Bjørnerud, Ulrik F. Malt, Ole A. Andreassen, Evangelos Roussos, Eugene P. Duff, Stephen M. Smith, Inge R. Groote, Lars T. Westlye

NeuroImage, 2016

How reliable are MEG resting-state connectivity metrics?

Giles L. Colclough, Mark W. Woolrich, Prejaas Tewarie, Matthew J. Brookes, Andrew J. Quinn, Stephen M. Smith

NeuroImage, 2016

A multi-modal parcellation of human cerebral cortex.

Matthew F. Glasser, Timothy S. Coalson, Emma C. Robinson, Carl D. Hacker, John W. Harwell, Essa Yacoub, Kâmil Ugurbil, Jesper L. R. Andersson, Christian F. Beckmann, Mark Jenkinson, Stephen M. Smith, David C. Van Essen

Nat., 2016

2015

Multi-level block permutation.

Anderson M. Winkler, Matthew A. Webster, Diego Vidaurre, Thomas E. Nichols, Stephen M. Smith

NeuroImage, 2015

Large-scale Probabilistic Functional Modes from resting state fMRI.

Samuel J. Harrison, Mark W. Woolrich, Emma C. Robinson, Matthew F. Glasser, Christian F. Beckmann, Mark Jenkinson, Stephen M. Smith

NeuroImage, 2015

A symmetric multivariate leakage correction for MEG connectomes.

Giles L. Colclough, Matthew J. Brookes, Stephen M. Smith, Mark W. Woolrich

NeuroImage, 2015

Attentional load modulates large-scale functional brain connectivity beyond the core attention networks.

Dag Alnæs, Tobias Kaufmann, Geneviève Richard, Eugene P. Duff, Markus H. Sneve, Tor Endestad, Jan Egil Nordvik, Ole A. Andreassen, Stephen M. Smith, Lars T. Westlye

NeuroImage, 2015

Functional Connectivity under Anticipation of Shock: Correlates of Trait Anxious Affect versus Induced Anxiety.

Janine Bijsterbosch, Stephen M. Smith, Sonia J. Bishop

J. Cogn. Neurosci., 2015

2014

Permutation inference for the general linear model.

Anderson M. Winkler, Gerard R. Ridgway, Matthew A. Webster, Stephen M. Smith, Thomas E. Nichols

NeuroImage, 2014

Group-PCA for very large fMRI datasets.

Stephen M. Smith, Aapo Hyvärinen, Gaël Varoquaux, Karla L. Miller, Christian F. Beckmann

NeuroImage, 2014

MSM: A new flexible framework for Multimodal Surface Matching.

Emma C. Robinson, Saâd Jbabdi, Matthew F. Glasser, Jesper L. R. Andersson, Gregory C. Burgess, Michael P. Harms, Stephen M. Smith, David C. Van Essen, Mark Jenkinson

NeuroImage, 2014

Optimizing full-brain coverage in human brain MRI through population distributions of brain size.

Maarten Mennes, Mark Jenkinson, Romain Valabrègue, Jan K. Buitelaar, Christian F. Beckmann, Stephen M. Smith

NeuroImage, 2014

Automatic denoising of functional MRI data: Combining independent component analysis and hierarchical fusion of classifiers.

Gholamreza Salimi Khorshidi, Gwenaëlle Douaud, Christian F. Beckmann, Matthew F. Glasser, Ludovica Griffanti, Stephen M. Smith

NeuroImage, 2014

ICA-based artefact removal and accelerated fMRI acquisition for improved resting state network imaging.

Ludovica Griffanti, Gholamreza Salimi Khorshidi, Christian F. Beckmann, Edward J. Auerbach, Gwenaëlle Douaud, Claire E. Sexton, Eniko Zsoldos, Klaus P. Ebmeier, Nicola Filippini, Clare E. Mackay, Steen Moeller, Junqian Xu, Essa Yacoub, Giuseppe Baselli, Kâmil Ugurbil, Karla L. Miller, Stephen M. Smith

NeuroImage, 2014

Resting State Correlates of Subdimensions of Anxious Affect.

Janine Bijsterbosch, Stephen M. Smith, Sophie Forster, Oliver P. John, Sonia J. Bishop

J. Cogn. Neurosci., 2014

MVPA to enhance the study of rare cognitive events: An investigation of experimental PTSD.

Katherine E. Niehaus, Ian A. Clark, Corin Bourne, Clare E. Mackay, Emily A. Holmes, Stephen M. Smith, Mark William Woolrich, Eugene P. Duff

Proceedings of the International Workshop on Pattern Recognition in Neuroimaging, 2014

2013

Evaluation of slice accelerations using multiband echo planar imaging at 3 T.

Junqian Xu, Steen Moeller, Edward J. Auerbach, John P. Strupp, Stephen M. Smith, David A. Feinberg, Essa Yacoub, Kâmil Ugurbil

NeuroImage, 2013

Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project.

Kâmil Ugurbil, Junqian Xu, Edward J. Auerbach, Steen Moeller, An T. Vu, Julio Martin Duarte-Carvajalino, Christophe Lenglet, Xiaoping Wu, Sebastian Schmitter, Pierre-François van de Moortele, John P. Strupp, Guillermo Sapiro, Federico De Martino, Dingxin Wang, Noam Harel, Michael Garwood, Liyong Chen, David A. Feinberg, Stephen M. Smith, Karla L. Miller, Stamatios N. Sotiropoulos, Saâd Jbabdi, Jesper L. R. Andersson, Timothy Edward John Behrens, Matthew F. Glasser, David C. Van Essen, Essa Yacoub

NeuroImage, 2013

Resting-state fMRI in the Human Connectome Project.

Stephen M. Smith, Christian F. Beckmann, Jesper L. R. Andersson, Edward J. Auerbach, Janine D. Bijsterbosch, Gwenaëlle Douaud, Eugene P. Duff, David A. Feinberg, Ludovica Griffanti, Michael P. Harms, Michael Kelly, Timothy O. Laumann, Karla L. Miller, Steen Moeller, Steven E. Petersen, Jonathan D. Power, Gholamreza Salimi Khorshidi, Abraham Z. Snyder, An T. Vu, Mark William Woolrich, Junqian Xu, Essa Yacoub, Kâmil Ugurbil, David C. Van Essen, Matthew F. Glasser

NeuroImage, 2013

Introduction to the NeuroImage Special Issue "Mapping the Connectome".

Steve M. Smith

NeuroImage, 2013

Improving alignment in Tract-based spatial statistics: Evaluation and optimization of image registration.

Marius de Groot, Meike W. Vernooij, Stefan Klein, Mohammad Arfan Ikram, Frans M. Vos, Stephen M. Smith, Wiro J. Niessen, Jesper L. R. Andersson

NeuroImage, 2013

The WU-Minn Human Connectome Project: An overview.

David C. Van Essen, Stephen M. Smith, Deanna M. Barch, Timothy Edward John Behrens, Essa Yacoub, Kâmil Ugurbil

NeuroImage, 2013

Spatially constrained hierarchical parcellation of the brain with resting-state fMRI.

Thomas Blumensath, Saâd Jbabdi, Matthew F. Glasser, David C. Van Essen, Kâmil Ugurbil, Timothy Edward John Behrens, Stephen M. Smith

NeuroImage, 2013

Function in the human connectome: Task-fMRI and individual differences in behavior.

Deanna M. Barch, Gregory C. Burgess, Michael P. Harms, Steven E. Petersen, Bradley L. Schlaggar, Maurizio Corbetta, Matthew F. Glasser, Sandra W. Curtiss, Sachin Dixit, Cindy Feldt, Dan Nolan, Edward Bryant, Tucker Hartley, Owen Footer, James M. Bjork, Russell A. Poldrack, Steve M. Smith, Heidi Johansen-Berg, Abraham Z. Snyder, David C. Van Essen

NeuroImage, 2013

Pairwise likelihood ratios for estimation of non-Gaussian structural equation models.

Aapo Hyvärinen, Stephen M. Smith

J. Mach. Learn. Res., 2013

Utility of Partial Correlation for Characterising Brain Dynamics: MVPA-based Assessment of Regularisation and Network Selection.

Eugene P. Duff, Tamar R. Makin, Sasidhar Madugula, Stephen M. Smith, Mark William Woolrich

Proceedings of the International Workshop on Pattern Recognition in Neuroimaging, 2013

Multimodal Surface Matching: Fast and Generalisable Cortical Registration Using Discrete Optimisation.

Emma C. Robinson, Saâd Jbabdi, Jesper L. R. Andersson, Stephen M. Smith, Matthew F. Glasser, David C. Van Essen, Gregory C. Burgess, Michael P. Harms, Deanna M. Barch, Mark Jenkinson

Proceedings of the Information Processing in Medical Imaging, 2013

2012

The effects of APOE on the functional architecture of the resting brain.

Aaron J. Trachtenberg, Nicola Filippini, Klaus P. Ebmeier, Steve M. Smith, Fredrik Karpe, Clare E. Mackay

NeuroImage, 2012

The danger of systematic bias in group-level FMRI-lag-based causality estimation.

Stephen M. Smith, Peter A. Bandettini, Karla L. Miller, T. E. J. Behrens, Karl J. Friston, Olivier David, Thomas T. Liu, Mark William Woolrich, Thomas E. Nichols

NeuroImage, 2012

The future of FMRI connectivity.

Stephen M. Smith

NeuroImage, 2012

FSL.

Mark Jenkinson, Christian F. Beckmann, Timothy Edward John Behrens, Mark William Woolrich, Stephen M. Smith

NeuroImage, 2012

Benefits of multi-modal fusion analysis on a large-scale dataset: Life-span patterns of inter-subject variability in cortical morphometry and white matter microstructure.

Adrian R. Groves, Stephen M. Smith, Anders M. Fjell, Christian K. Tamnes, Kristine B. Walhovd, Gwenaëlle Douaud, Mark William Woolrich, Lars T. Westlye

NeuroImage, 2012

Age-related adaptations of brain function during a memory task are also present at rest.

Nicola Filippini, Lisa D. H. Nickerson, Christian F. Beckmann, Klaus P. Ebmeier, Giovanni B. Frisoni, Paul M. Matthews, Steve M. Smith, Clare E. Mackay

NeuroImage, 2012

The Human Connectome Project: A data acquisition perspective.

David C. Van Essen, Kâmil Ugurbil, Edward J. Auerbach, Deanna M. Barch, T. E. J. Behrens, R. Bucholz, Acer Chang, Liyong Chen, Maurizio Corbetta, Sandra W. Curtiss, Stefania Della Penna, David A. Feinberg, Matthew F. Glasser, Noam Harel, A. C. Heath, Linda J. Larson-Prior, Daniel S. Marcus, Georgios Michalareas, Steen Moeller, Robert Oostenveld, Steven E. Petersen, Fred W. Prior, Bradley L. Schlaggar, Stephen M. Smith, Abraham Z. Snyder, Junqian Xu, Essa Yacoub

NeuroImage, 2012

Task-driven ICA feature generation for accurate and interpretable prediction using fMRI.

Eugene P. Duff, Aaron J. Trachtenberg, Clare E. Mackay, Matthew Alexander Howard, Frederick Wilson, Stephen M. Smith, Mark William Woolrich

NeuroImage, 2012

Resting-State FMRI Single Subject Cortical Parcellation Based on Region Growing.

Thomas Blumensath, Timothy Edward John Behrens, Stephen M. Smith

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

2011

Using Gaussian-Process Regression for Meta-Analytic Neuroimaging Inference Based on Sparse Observations.

Gholamreza Salimi Khorshidi, Thomas E. Nichols, Stephen M. Smith, Mark William Woolrich

IEEE Trans. Medical Imaging, 2011

Network modelling methods for FMRI.

Stephen M. Smith, Karla L. Miller, Gholamreza Salimi Khorshidi, Matthew A. Webster, Christian F. Beckmann, Thomas E. Nichols, Joseph D. Ramsey, Mark William Woolrich

NeuroImage, 2011

A Bayesian model of shape and appearance for subcortical brain segmentation.

Brian Patenaude, Stephen M. Smith, David N. Kennedy, Mark Jenkinson

NeuroImage, 2011

Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner.

Karla L. Miller, Charlotte J. Stagg, Gwenaëlle Douaud, Saâd Jbabdi, Stephen M. Smith, Timothy Edward John Behrens, Mark Jenkinson, Steven A. Chance, Margaret M. Esiri, Natalie L. Voets, Ned Jenkinson, Tipu Z. Aziz, Martin R. Turner, Heidi Johansen-Berg, Jennifer A. McNab

NeuroImage, 2011

Adjusting the effect of nonstationarity in cluster-based and TFCE inference.

Gholamreza Salimi Khorshidi, Stephen M. Smith, Thomas E. Nichols

NeuroImage, 2011

Linked independent component analysis for multimodal data fusion.

Adrian R. Groves, Christian F. Beckmann, Steve M. Smith, Mark William Woolrich

NeuroImage, 2011

Differential effects of the APOE genotype on brain function across the lifespan.

Nicola Filippini, Klaus P. Ebmeier, Bradley J. MacIntosh, Aaron J. Trachtenberg, Giovanni B. Frisoni, G. K. Wilcock, Christian F. Beckmann, Steve M. Smith, Paul M. Matthews, Clare E. Mackay

NeuroImage, 2011

DTI measures in crossing-fibre areas: Increased diffusion anisotropy reveals early white matter alteration in MCI and mild Alzheimer's disease.

Gwenaëlle Douaud, Saâd Jbabdi, Timothy Edward John Behrens, Ricarda A. Menke, Achim Gass, Andreas U. Monsch, Anil Rao, Brandon J. Whitcher, Gordon L. Kindlmann, Paul M. Matthews, Stephen M. Smith

NeuroImage, 2011

Behavioral Interpretations of Intrinsic Connectivity Networks.

Angela R. Laird, P. Mickle Fox, Simon B. Eickhoff, Jessica A. Turner, Kimberly L. Ray, David Reese McKay, David C. Glahn, Christian F. Beckmann, Stephen M. Smith, Peter T. Fox

J. Cogn. Neurosci., 2011

2010

Combining shape and connectivity analysis: An MRI study of thalamic degeneration in Alzheimer's disease.

Mojtaba Zarei, Brian Patenaude, Jessica Damoiseaux, Ciro Morgese, Steve M. Smith, Paul M. Matthews, Frederik Barkhof, Serge A. R. B. Rombouts, Ernesto Sanz-Arigita, Mark Jenkinson

NeuroImage, 2010

Corrigendum to "Combining shape and connectivity analysis: An MRI study of thalamic degeneration in Alzheimer's disease" [NeuroImage 49 (2010) 1-8].

Mojtaba Zarei, Brian Patenaude, Jessica Damoiseaux, Ciro Morgese, Steve M. Smith, Paul M. Matthews, Frederik Barkhof, Serge A. R. B. Rombouts, Ernesto Sanz-Arigita, Mark Jenkinson

NeuroImage, 2010

Genetics of microstructure of cerebral white matter using diffusion tensor imaging.

Peter V. Kochunov, David C. Glahn, Jack L. Lancaster, Anderson M. Winkler, Stephen M. Smith, Paul M. Thompson, Laura Almasy, Ravindranath Duggirala, Peter T. Fox, John Blangero

NeuroImage, 2010

Crossing fibres in tract-based spatial statistics.

Saâd Jbabdi, Timothy Edward John Behrens, Stephen M. Smith

NeuroImage, 2010

Longitudinal changes in grey and white matter during adolescence.

Antonio Giorgio, Kate E. Watkins, M. Chadwick, S. James, Louise Winmill, Gwenaëlle Douaud, Nicola De Stefano, Paul M. Matthews, Steve M. Smith, Heidi Johansen-Berg, A. C. James

NeuroImage, 2010

Age-related changes in grey and white matter structure throughout adulthood.

Antonio Giorgio, Luca Santelli, Valentina Tomassini, Rose Bosnell, Stephen M. Smith, Nicola De Stefano, Heidi Johansen-Berg

NeuroImage, 2010

Corrigendum to "An evaluation of four automatic methods of segmenting the subcortical structures in the brain" [NeuroImage 47 (2009) 1435-1447].

Kolawole Oluwole Babalola, Brian Patenaude, Paul Aljabar, Julia A. Schnabel, David N. Kennedy, William R. Crum, Stephen M. Smith, Timothy F. Cootes, Mark Jenkinson, Daniel Rueckert

NeuroImage, 2010

2009

Sampling and Visualizing Creases with Scale-Space Particles.

Gordon L. Kindlmann, Raúl San José Estépar, Stephen M. Smith, Carl-Fredrik Westin

IEEE Trans. Vis. Comput. Graph., 2009

Bayesian analysis of neuroimaging data in FSL.

Mark William Woolrich, Saâd Jbabdi, Brian Patenaude, Michael A. Chappell, Salima Makni, Timothy Behrens, Christian F. Beckmann, Mark Jenkinson, Stephen M. Smith

NeuroImage, 2009

Threshold-free cluster enhancement: Addressing problems of smoothing, threshold dependence and localisation in cluster inference.

Stephen M. Smith, Thomas E. Nichols

NeuroImage, 2009

Erratum to "Bayesian deconvolution of fMRI data using bilinear dynamical systems" [NeuroImage 42 (2008) 1381-1396].

Salima Makni, Christian F. Beckmann, Steve M. Smith, Mark William Woolrich

NeuroImage, 2009

Meta-analysis of neuroimaging data: A comparison of image-based and coordinate-based pooling of studies.

Gholamreza Salimi Khorshidi, Stephen M. Smith, John Keltner, Tor D. Wager, Thomas E. Nichols

NeuroImage, 2009

An evaluation of four automatic methods of segmenting the subcortical structures in the brain.

Kolawole Oluwole Babalola, Brian Patenaude, Paul Aljabar, Julia A. Schnabel, David N. Kennedy, William R. Crum, Stephen M. Smith, Timothy F. Cootes, Mark Jenkinson, Daniel Rueckert

NeuroImage, 2009

Performance Evaluation of Ensemble Empirical Mode Decomposition.

Rami K. Niazy, Christian F. Beckmann, J. Michael Brady, Stephen M. Smith

Adv. Data Sci. Adapt. Anal., 2009

Methods for Tractography-Driven Surface Registration of Brain Structures.

Aleksandar Petrovic, Stephen M. Smith, Ricarda A. Menke, Mark Jenkinson

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Adjusting the Neuroimaging Statistical Inferences for Nonstationarity.

Gholamreza Salimi Khorshidi, Stephen M. Smith, Thomas E. Nichols

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

2008

Evidence for abnormalities of cortical development in adolescent-onset schizophrenia.

Natalie L. Voets, Morgan G. Hough, Gwenaëlle Douaud, Paul M. Matthews, Anthony James, Louise Winmill, Paula Webster, Stephen M. Smith

NeuroImage, 2008

Bayesian deconvolution fMRI data using bilinear dynamical systems.

Salima Makni, Christian F. Beckmann, Steve M. Smith, Mark William Woolrich

NeuroImage, 2008

Changes in white matter microstructure during adolescence.

Antonio Giorgio, Kate E. Watkins, Gwenaëlle Douaud, A. C. James, S. James, Nicola De Stefano, Paul M. Matthews, Steve M. Smith, Heidi Johansen-Berg

NeuroImage, 2008

Reproducibility of fMRI in the clinical setting: Implications for trial designs.

Rose Bosnell, C. Wegner, Zsigmond Tamás Kincses, T. Korteweg, Federica Agosta, Olga Ciccarelli, Nicola De Stefano, Achim Gass, Jochen G. Hirsch, Heidi Johansen-Berg, Ludwig Kappos, Frederik Barkhof, Laura Mancini, F. Manfredonia, S. Marino, David H. Miller, Xavier Montalban, Jackie Palace, Maria Assunta Rocca, Christian Enzinger, Stefan Ropele, Alex Rovira, Stephen M. Smith, Alan J. Thompson, John S. Thornton, Tarek A. Yousry, Brandon J. Whitcher, Massimo Filippi, Paul M. Matthews

NeuroImage, 2008

Enhanced brain extraction improves the accuracy of brain atrophy estimation.

Marco Battaglini, Stephen M. Smith, Susanna Brogi, Nicola De Stefano

NeuroImage, 2008

Comparison and Evaluation of Segmentation Techniques for Subcortical Structures in Brain MRI.

Kolawole O. Babalola, Brian Patenaude, Paul Aljabar, Julia A. Schnabel, David N. Kennedy, William R. Crum, Stephen M. Smith, Timothy F. Cootes, Mark Jenkinson, Daniel Rueckert

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

2007

Longitudinal and cross-sectional analysis of atrophy in Alzheimer's disease: Cross-validation of BSI, SIENA and SIENAX.

Stephen M. Smith, Anil Rao, Nicola De Stefano, Mark Jenkinson, Jonathan M. Schott, Paul M. Matthews, Nick C. Fox

NeuroImage, 2007

Meaningful design and contrast estimability in FMRI.

Stephen M. Smith, Mark Jenkinson, Christian F. Beckmann, Karla L. Miller, Mark W. Woolrich

NeuroImage, 2007

Signal and noise characteristics of SSFP FMRI: A comparison with GRE at multiple field strengths.

Karla L. Miller, Stephen M. Smith, Peter Jezzard, Graham C. Wiggins, Christopher J. Wiggins

NeuroImage, 2007

Relationship between white matter fractional anisotropy and other indices of cerebral health in normal aging: Tract-based spatial statistics study of aging.

Peter V. Kochunov, Paul M. Thompson, Jack L. Lancaster, George Bartzokis, Stephen M. Smith, Thomas R. Coyle, Donald Royall, Angela R. Laird, Peter T. Fox

NeuroImage, 2007

Regional brain atrophy development is related to specific aspects of clinical dysfunction in multiple sclerosis.

Bas Jasperse, Hugo Vrenken, Ernesto Sanz-Arigita, Vincent de Groot, Stephen M. Smith, Chris H. Polman, Frederik Barkhof

NeuroImage, 2007

Discordant white matter N-acetylasparate and diffusion MRI measures suggest that chronic metabolic dysfunction contributes to axonal pathology in multiple sclerosis.

S. Cader, Heidi Johansen-Berg, M. Wylezinska, Jackie Palace, Tim E. J. Behrens, Stephen M. Smith, Paul M. Matthews

NeuroImage, 2007

Independent Component Analysis of Functional Magnetic Resonance Imaging Data Using Wavelet Dictionaries.

Robert Johnson, Jonathan Marchini, Stephen M. Smith, Christian F. Beckmann

Proceedings of the Independent Component Analysis and Signal Separation, 2007

2006

Tract-based spatial statistics: Voxelwise analysis of multi-subject diffusion data.

Stephen M. Smith, Mark Jenkinson, Heidi Johansen-Berg, Daniel Rueckert, Thomas E. Nichols, Clare E. Mackay, Kate E. Watkins, Olga Ciccarelli, M. Zaheer Cader, Paul M. Matthews, Timothy Edward John Behrens

NeuroImage, 2006

fMRI resting state networks define distinct modes of long-distance interactions in the human brain.

Marilena De Luca, Christian F. Beckmann, Nicola De Stefano, Paul M. Matthews, Stephen M. Smith

NeuroImage, 2006

A consistent relationship between local white matter architecture and functional specialisation in medial frontal cortex.

T. E. J. Behrens, Mark Jenkinson, Matthew D. Robson, Stephen M. Smith, Heidi Johansen-Berg

NeuroImage, 2006

Concurrent numerical simulation of flow and blood clotting using the lattice Boltzmann technique.

Jörg Bernsdorf, Sarah E. Harrison, Stephen M. Smith, Patricia V. Lawford, D. Rodney Hose

Int. J. Bioinform. Res. Appl., 2006

A Bayesian Cost Function Applied to Model-Based Registration of Sub-cortical Brain Structures.

Brian Patenaude, Stephen M. Smith, Mark Jenkinson

Proceedings of the Biomedical Image Registration, Third International Workshop, 2006

2005

Mixture models with adaptive spatial regularization for segmentation with an application to FMRI data.

Mark William Woolrich, Timothy Edward John Behrens, Christian F. Beckmann, Stephen M. Smith

IEEE Trans. Medical Imaging, 2005

Removal of FMRI environment artifacts from EEG data using optimal basis sets.

Rami K. Niazy, Christian F. Beckmann, Gian Domenico Iannetti, J. Michael Brady, Stephen M. Smith

NeuroImage, 2005

Tensorial extensions of independent component analysis for multisubject FMRI analysis.

Christian F. Beckmann, Stephen M. Smith

NeuroImage, 2005

A comparison of the tissue classification and the segmentation propagation techniques in MRI brain image segmentation.

Jinsong Ren, Beatrix I. Sneller, Daniel Rueckert, Joseph V. Hajnal, Rolf A. Heckemann, Stephen M. Smith, John Vickers, Derek L. G. Hill

Proceedings of the Medical Imaging 2005: Image Processing, 2005

2004

Fully Bayesian spatio-temporal modeling of FMRI data.

Mark William Woolrich, Mark Jenkinson, J. Michael Brady, Stephen M. Smith

IEEE Trans. Medical Imaging, 2004

Probabilistic independent component analysis for functional magnetic resonance imaging.

Christian F. Beckmann, Stephen M. Smith

IEEE Trans. Medical Imaging, 2004

Constrained linear basis sets for HRF modelling using Variational Bayes.

Mark W. Woolrich, Timothy Edward John Behrens, Stephen M. Smith

NeuroImage, 2004

Multilevel linear modelling for FMRI group analysis using Bayesian inference.

Mark W. Woolrich, Timothy Edward John Behrens, Christian F. Beckmann, Mark Jenkinson, Stephen M. Smith

NeuroImage, 2004

Relating neocortical pathology to disability progression in multiple sclerosis using MRI.

J. T. Chen, Sridar Narayanan, D. Louis Collins, Steve M. Smith, Paul M. Matthews, Douglas L. Arnold

NeuroImage, 2004

A Framework for Detailed Objective Comparison of Non-rigid Registration Algorithms in Neuroimaging.

William R. Crum, Daniel Rueckert, Mark Jenkinson, David N. Kennedy, Stephen M. Smith

Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

2003

On Bias in the Estimation of Autocorrelations for fMRI Voxel Time-Series Analysis.

Jonathan Marchini, Stephen M. Smith

NeuroImage, 2003

General multilevel linear modeling for group analysis in FMRI.

Christian F. Beckmann, Mark Jenkinson, Stephen M. Smith

NeuroImage, 2003

CT Reconstruction Using FBP with Sinusoidal Amendment for Metal Artefact Reduction.

Julian J. Liu, Stephen R. Watt-Smith, Stephen M. Smith

Proceedings of the Seventh International Conference on Digital Image Computing: Techniques and Applications, 2003

2002

Accurate, Robust, and Automated Longitudinal and Cross-Sectional Brain Change Analysis.

Stephen M. Smith, Yongyue Zhang, Mark Jenkinson, Jacqueline Chen, Paul M. Matthews, Antonio Federico, Nicola De Stefano

NeuroImage, 2002

Improved Optimization for the Robust and Accurate Linear Registration and Motion Correction of Brain Images.

Mark Jenkinson, Peter R. Bannister, Michael Brady, Stephen M. Smith

NeuroImage, 2002

Effects of Word Form on Brain Processing of Written Chinese.

Shimin Fu, Yiping Chen, Stephen M. Smith, Susan Iversen, Paul M. Matthews

NeuroImage, 2002

A Dynamic Brain Atlas.

Derek L. G. Hill, Joseph V. Hajnal, Daniel Rueckert, Stephen M. Smith, Thomas Hartkens, Kate McLeish

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2002

2001

Segmentation of Brain MR Images through a Hidden Markov Random Field Model and the Expectation Maximization Algorithm.

Yongyue Zhang, Michael Brady, Stephen M. Smith

IEEE Trans. Medical Imaging, 2001

Temporal Autocorrelation in Univariate Linear Modeling of FMRI Data.

Mark W. Woolrich, Brian D. Ripley, J. Michael Brady, Stephen M. Smith

NeuroImage, 2001

A global optimisation method for robust affine registration of brain images.

Mark Jenkinson, Stephen M. Smith

Medical Image Anal., 2001

2000

Hidden Markov random field model for segmentation of brain MR image.

Yongyue Zhang, J. Michael Brady, Stephen M. Smith

Proceedings of the Medical Imaging 2000: Image Processing, 2000

1999

A Non-Rigid Registration Algorithm for Dynamic Breast MR Images.

Paul M. Hayton, Michael Brady, Stephen M. Smith, Niall Moore

Artif. Intell., 1999

Accurate Robust Symmetry Estimation.

Stephen M. Smith, Mark Jenkinson

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1999

1998

ASSET-2: Real-Time Motion Segmentation and Object Tracking.

Stephen M. Smith

Real Time Imaging, 1998

1997

SUSAN - A New Approach to Low Level Image Processing.

Stephen M. Smith, J. Michael Brady

Int. J. Comput. Vis., 1997

1996

Integrated real-time motion segmentation and 3D interpretation.

Stephen M. Smith

Proceedings of the 13th International Conference on Pattern Recognition, 1996

1995

ASSET-2: Real-Time Motion Segmentation and Shape Tracking.

Stephen M. Smith, Michael Brady

IEEE Trans. Pattern Anal. Mach. Intell., 1995

ASSET-2: Real-Time Motion Segmentation and Shape Tracking.

Stephen M. Smith

Proceedings of the Procedings of the Fifth International Conference on Computer Vision (ICCV 95), 1995

1993

Note on small angle approximations for stereo disparity.

Stephen M. Smith

Image Vis. Comput., 1993

Planar region detection and motion recovery.

David Sinclair, Andrew Blake, Stephen M. Smith, Charlie Rothwell

Image Vis. Comput., 1993

1992

A New Class of Corner Finder.

Stephen M. Smith

Proceedings of the British Machine Vision Conference, 1992