Mark Jenkinson

According to our database1, Mark Jenkinson authored at least 109 papers between 1998 and 2022.

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Bibliography

2022
Subcortical segmentation of the fetal brain in 3D ultrasound using deep learning.
NeuroImage, 2022

FedHarmony: Unlearning Scanner Bias with Distributed Data.
CoRR, 2022

How certain are your uncertainties?
CoRR, 2022

Mutual information neural estimation for unsupervised multi-modal registration of brain images.
CoRR, 2022

Omni-Supervised Domain Adversarial Training for White Matter Hyperintensity Segmentation in the UK Biobank.
Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022

2021
Deep learning-based unlearning of dataset bias for MRI harmonisation and confound removal.
NeuroImage, 2021

Learning patterns of the ageing brain in MRI using deep convolutional networks.
NeuroImage, 2021

Integrating large-scale neuroimaging research datasets: Harmonisation of white matter hyperintensity measurements across Whitehall and UK Biobank datasets.
NeuroImage, 2021

Triplanar ensemble U-Net model for white matter hyperintensities segmentation on MR images.
Medical Image Anal., 2021

Comparison of domain adaptation techniques for white matter hyperintensity segmentation in brain MR images.
Medical Image Anal., 2021

Automated Detection of Candidate Subjects With Cerebral Microbleeds Using Machine Learning.
Frontiers Neuroinformatics, 2021

Challenges for machine learning in clinical translation of big data imaging studies.
CoRR, 2021

Brain tumour segmentation using a triplanar ensemble of U-Nets.
CoRR, 2021

Assessment of Regional Cortical Development Through Fissure Based Gestational Age Estimation in 3D Fetal Ultrasound.
Proceedings of the Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and Perinatal Imaging, Placental and Preterm Image Analysis, 2021

TEDS-Net: Enforcing Diffeomorphisms in Spatial Transformers to Guarantee Topology Preservation in Segmentations.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

Self-Supervised Lesion Change Detection and Localisation in Longitudinal Multiple Sclerosis Brain Imaging.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

2020
The developing Human Connectome Project (dHCP) automated resting-state functional processing framework for newborn infants.
NeuroImage, 2020

Cortical Plate Segmentation Using CNNs in 3D Fetal Ultrasound.
Proceedings of the Medical Image Understanding and Analysis - 24th Annual Conference, 2020

Unlearning Scanner Bias for MRI Harmonisation in Medical Image Segmentation.
Proceedings of the Medical Image Understanding and Analysis - 24th Annual Conference, 2020

Unlearning Scanner Bias for MRI Harmonisation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

A 2-Step Deep Learning Method with Domain Adaptation for Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Magnetic Resonance Segmentation.
Proceedings of the Statistical Atlases and Computational Models of the Heart. M&Ms and EMIDEC Challenges, 2020

Brain Tumour Segmentation Using a Triplanar Ensemble of U-Nets on MR Images.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2020

2019
Assessing Reliability of Myocardial Blood Flow After Motion Correction With Dynamic PET Using a Bayesian Framework.
IEEE Trans. Medical Imaging, 2019

Automated lesion segmentation with BIANCA: Impact of population-level features, classification algorithm and locally adaptive thresholding.
NeuroImage, 2019

Modelling the distribution of white matter hyperintensities due to ageing on MRI images using Bayesian inference.
NeuroImage, 2019

Optimising neonatal fMRI data analysis: Design and validation of an extended dHCP preprocessing pipeline to characterise noxious-evoked brain activity in infants.
NeuroImage, 2019

Spatial Warping Network for 3D Segmentation of the Hippocampus in MR Images.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

2018
Classification and characterization of periventricular and deep white matter hyperintensities on MRI: A study in older adults.
NeuroImage, 2018

Image processing and Quality Control for the first 10, 000 brain imaging datasets from UK Biobank.
NeuroImage, 2018

2017
BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods.
PLoS Comput. Biol., 2017

Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging.
NeuroImage, 2017

Denoising spinal cord fMRI data: Approaches to acquisition and analysis.
NeuroImage, 2017

2016
Automated segmentation of the substantia nigra, subthalamic nucleus and red nucleus in 7 T data at young and old age.
NeuroImage, 2016

Automatic segmentation of the striatum and globus pallidus using MIST: Multimodal Image Segmentation Tool.
NeuroImage, 2016

Multi-modal characterization of rapid anterior hippocampal volume increase associated with aerobic exercise.
NeuroImage, 2016

BIANCA (Brain Intensity AbNormality Classification Algorithm): A new tool for automated segmentation of white matter hyperintensities.
NeuroImage, 2016

Challenges in the reproducibility of clinical studies with resting state fMRI: An example in early Parkinson's disease.
NeuroImage, 2016

A multi-modal parcellation of human cerebral cortex.
Nat., 2016

Iterative Dual LDA: A Novel Classification Algorithm for Resting State fMRI.
Proceedings of the Machine Learning in Medical Imaging - 7th International Workshop, 2016

Construction of a neonatal cortical surface atlas using multimodal surface matching.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

2015
Quantitative Susceptibility Mapping by Inversion of a Perturbation Field Model: Correlation With Brain Iron in Normal Aging.
IEEE Trans. Medical Imaging, 2015

Large-scale Probabilistic Functional Modes from resting state fMRI.
NeuroImage, 2015

Functional subdivision of the human periaqueductal grey in respiratory control using 7 tesla fMRI.
NeuroImage, 2015

2014
Optimizing RetroICor and RetroKCor corrections for multi-shot 3D FMRI acquisitions.
NeuroImage, 2014

Gray matter volume is associated with rate of subsequent skill learning after a long term training intervention.
NeuroImage, 2014

MSM: A new flexible framework for Multimodal Surface Matching.
NeuroImage, 2014

Optimizing full-brain coverage in human brain MRI through population distributions of brain size.
NeuroImage, 2014

Correspondences between retinotopic areas and myelin maps in human visual cortex.
NeuroImage, 2014

2013
MRF-Based Deformable Registration and Ventilation Estimation of Lung CT.
IEEE Trans. Medical Imaging, 2013

Advances in diffusion MRI acquisition and processing in the Human Connectome Project.
NeuroImage, 2013

Human Connectome Project informatics: Quality control, database services, and data visualization.
NeuroImage, 2013

The minimal preprocessing pipelines for the Human Connectome Project.
NeuroImage, 2013

Towards Realtime Multimodal Fusion for Image-Guided Interventions Using Self-similarities.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

The Impact of Heterogeneity and Uncertainty on Prediction of Response to Therapy Using Dynamic MRI Data.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Multimodal Surface Matching: Fast and Generalisable Cortical Registration Using Discrete Optimisation.
Proceedings of the Information Processing in Medical Imaging, 2013

Edge- and Detail-Preserving Sparse Image Representations for Deformable Registration of Chest MRI and CT Volumes.
Proceedings of the Information Processing in Medical Imaging, 2013

2012
Optimizing parameter choice for FSL-Brain Extraction Tool (BET) on 3D T1 images in multiple sclerosis.
NeuroImage, 2012

Assessment of physiological noise modelling methods for functional imaging of the spinal cord.
NeuroImage, 2012

NeuroImage, 2012

MIND: Modality independent neighbourhood descriptor for multi-modal deformable registration.
Medical Image Anal., 2012

Globally Optimal Deformable Registration on a Minimum Spanning Tree Using Dense Displacement Sampling.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

Textural mutual information based on cluster trees for multimodal deformable registration.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

2011
Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge.
IEEE Trans. Medical Imaging, 2011

Imaging dopamine receptors in humans with [<sup>11</sup>C]-(+)-PHNO: Dissection of D3 signal and anatomy.
NeuroImage, 2011

A Bayesian model of shape and appearance for subcortical brain segmentation.
NeuroImage, 2011

Diffusion imaging of whole, post-mortem human brains on a clinical MRI scanner.
NeuroImage, 2011

Novel Fast Marching for Automated Segmentation of the Hippocampus (FMASH): Method and validation on clinical data.
NeuroImage, 2011

Informatics and Data Mining Tools and Strategies for the Human Connectome Project.
Frontiers Neuroinformatics, 2011

Non-rigid image registration through efficient discrete optimization.
Proceedings of the Medical Image Understanding and Analysis, 2011

Non-local Shape Descriptor: A New Similarity Metric for Deformable Multi-modal Registration.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Motion Correction and Parameter Estimation in dceMRI Sequences: Application to Colorectal Cancer.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

2010
Combining shape and connectivity analysis: An MRI study of thalamic degeneration in Alzheimer's disease.
NeuroImage, 2010

Corrigendum to "Combining shape and connectivity analysis: An MRI study of thalamic degeneration in Alzheimer's disease" [NeuroImage 49 (2010) 1-8].
NeuroImage, 2010

A combined diffusion tensor imaging (DTI) and [11C]-(+)-PHNO positron emission tomography (PET) study to quantify dopamine D3/D2 receptors in pallidum.
NeuroImage, 2010

Corrigendum to "An evaluation of four automatic methods of segmenting the subcortical structures in the brain" [NeuroImage 47 (2009) 1435-1447].
NeuroImage, 2010

Evaluation of Hippocampal Segmentation Methods for Healthy and Pathological Subjects.
Proceedings of the Eurographics Workshop on Visual Computing for Biomedicine, 2010

2009
Bayesian analysis of neuroimaging data in FSL.
NeuroImage, 2009

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration.
NeuroImage, 2009

An evaluation of four automatic methods of segmenting the subcortical structures in the brain.
NeuroImage, 2009

Atlas-Based Improved Prediction of Magnetic Field Inhomogeneity for Distortion Correction of EPI Data.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Methods for Tractography-Driven Surface Registration of Brain Structures.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

2008
Physiological noise modelling for spinal functional magnetic resonance imaging studies.
NeuroImage, 2008

Fieldmap-Free Retrospective Registration and Distortion Correction for EPI-Based Functional Imaging.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Comparison and Evaluation of Segmentation Techniques for Subcortical Structures in Brain MRI.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

2007
Longitudinal and cross-sectional analysis of atrophy in Alzheimer's disease: Cross-validation of BSI, SIENA and SIENAX.
NeuroImage, 2007

Meaningful design and contrast estimability in FMRI.
NeuroImage, 2007

Integrating temporal information with a non-rigid method of motion correction for functional magnetic resonance images.
Image Vis. Comput., 2007

A Marginalized MAP Approach and EM Optimization for Pair-Wise Registration.
Proceedings of the Information Processing in Medical Imaging, 2007

2006
Tract-based spatial statistics: Voxelwise analysis of multi-subject diffusion data.
NeuroImage, 2006

A consistent relationship between local white matter architecture and functional specialisation in medial frontal cortex.
NeuroImage, 2006

A Bayesian Cost Function Applied to Model-Based Registration of Sub-cortical Brain Structures.
Proceedings of the Biomedical Image Registration, Third International Workshop, 2006

Comparing the Similarity of Statistical Shape Models Using the Bhattacharya Metric.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

2005
Generalised Overlap Measures for Assessment of Pairwise and Groupwise Image Registration and Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

2004
Fully Bayesian spatio-temporal modeling of FMRI data.
IEEE Trans. Medical Imaging, 2004

Multilevel linear modelling for FMRI group analysis using Bayesian inference.
NeuroImage, 2004

A Framework for Detailed Objective Comparison of Non-rigid Registration Algorithms in Neuroimaging.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004, 2004

Reducing Activation-Related Bias in FMRI Registration.
Proceedings of the Medical Imaging and Augmented Reality: Second International Workshop, 2004

TIGER - A New Model for Spatio-temporal Realignment of FMRI Data.
Proceedings of the Computer Vision and Mathematical Methods in Medical and Biomedical Image Analysis, 2004

Non-Rigid Motion Estimation and Spatio-Temporal Realignment in FMRI.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshops, 2004

2003
Protocol to determine the optimal intraoral passive shim for minimisation of susceptibility artifact in human inferior frontal cortex.
NeuroImage, 2003

General multilevel linear modeling for group analysis in FMRI.
NeuroImage, 2003

A Gradient-Informed Robust Motion Correction Method for FMRI.
Proceedings of the Biomedical Image Registration, Second International Workshop, 2003

2002
Fast, Fully Automated Global and Local Magnetic Field Optimization for fMRI of the Human Brain.
NeuroImage, 2002

Accurate, Robust, and Automated Longitudinal and Cross-Sectional Brain Change Analysis.
NeuroImage, 2002

Improved Optimization for the Robust and Accurate Linear Registration and Motion Correction of Brain Images.
NeuroImage, 2002

A saliency-based hierarchy for local symmetries.
Image Vis. Comput., 2002

2001
A global optimisation method for robust affine registration of brain images.
Medical Image Anal., 2001

1999
Accurate Robust Symmetry Estimation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 1999

1998
Feature Saliency from Noise Variations in Invariants.
Proceedings of the Computer Vision, 1998


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