Toshiaki Katayama

According to our database1, Toshiaki Katayama authored at least 36 papers between 2005 and 2020.

Collaborative distances:

Timeline

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Bibliography

2020
Ten simple rules to run a successful BioHackathon.
PLoS Comput. Biol., 2020

2019
TogoGenome/TogoStanza: modularized Semantic Web genome database.
Database J. Biol. Databases Curation, 2019

2018
NBDC RDF portal: a comprehensive repository for semantic data in life sciences.
Database J. Biol. Databases Curation, 2018

2017
DNA Data Bank of Japan.
Nucleic Acids Res., 2017

SPARQL-Proxy: A Generic Proxy Server for SPARQL Endpoint.
Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

SPARQList: Markdown-Based Highly Configurable REST API Hosting Server for SPARQL.
Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

Construction of Knowledge-Base for Clinical Interpretation of Genomic Variants.
Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

2016
DNA data bank of Japan (DDBJ) progress report.
Nucleic Acids Res., 2016

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation.
J. Biomed. Semant., 2016

2015
The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data.
Nucleic Acids Res., 2015

Implementation of linked data in the life sciences at BioHackathon 2011.
J. Biomed. Semant., 2015

SPARQL-enabled identifier conversion with Identifiers.org.
Bioinform., 2015

D2RQ Mapper.
Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

2014
TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model.
Nucleic Acids Res., 2014

CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes.
Nucleic Acids Res., 2014

PIERO ontology for analysis of biochemical transformations: Effective implementation of reaction information in the IUBMB enzyme list.
J. Bioinform. Comput. Biol., 2014

Community-driven development for computational biology at Sprints, Hackathons and Codefests.
BMC Bioinform., 2014

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.
J. Biomed. Semant., 2014

D3SPARQL: JavaScript Library for Visualization of SPARQL Results.
Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

2013
KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters.
Nucleic Acids Res., 2013

Interactive Platform for Semantic Gene Expression Analysis of Alzheimer's Disease.
Proceedings of the 6th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2013

2012
The Ruby UCSC API: accessing the UCSC genome database using Ruby.
BMC Bioinform., 2012

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.
Bioinform., 2012

Semantic Integration of the Genome Annotations.
Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

2011
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.
J. Biomed. Semant., 2011

BioMart Central Portal: an open database network for the biological community.
Database J. Biol. Databases Curation, 2011

2010
TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services.
Nucleic Acids Res., 2010

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows.
J. Biomed. Semant., 2010

BioRuby: bioinformatics software for the Ruby programming language.
Bioinform., 2010

2009
Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009.
Nucleic Acids Res., 2009

2008
KEGG Atlas mapping for global analysis of metabolic pathways.
Nucleic Acids Res., 2008

AAindex: amino acid index database, progress report 2008.
Nucleic Acids Res., 2008

KEGG for linking genomes to life and the environment.
Nucleic Acids Res., 2008

2006
ODB: a database of operons accumulating known operons across multiple genomes.
Nucleic Acids Res., 2006

From genomics to chemical genomics: new developments in KEGG.
Nucleic Acids Res., 2006

2005
Utilizing Evolutionary Information and Gene Expression Data for Estimating Gene Networks with Bayesian Network Models.
J. Bioinform. Comput. Biol., 2005


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