Pengyi Yang

Orcid: 0000-0003-1098-3138

According to our database¹, Pengyi Yang authored at least 39 papers between 2007 and 2024.

Collaborative distances:

Dijkstra number² of four.
Erdős number³ of four.

Timeline

Legend:

Book

In proceedings

Article

PhD thesis

Dataset

Other

Bibliography

2024

Interpretable deep learning in single-cell omics.

[BibT_eX]

[DOI]

CoRR, 2024

2023

Benchmarking of analytical combinations for COVID-19 outcome prediction using single-cell RNA sequencing data.

[BibT_eX]

[DOI]

Briefings Bioinform., May, 2023

2022

scFeatures: multi-view representations of single-cell and spatial data for disease outcome prediction.

[BibT_eX]

[DOI]

Bioinform., October, 2022

Functional analysis of the stable phosphoproteome reveals cancer vulnerabilities.

[BibT_eX]

[DOI]

Bioinform., 2022

2021

Uncovering cell identity through differential stability with Cepo.

[BibT_eX]

[DOI]

Nat. Comput. Sci., 2021

Feature selection revisited in the single-cell era.

[BibT_eX]

[DOI]

Pengyi Yang

Hao Huang

Chunlei Liu

CoRR, 2021

2020

Ensemble deep learning in bioinformatics.

[BibT_eX]

[DOI]

Nat. Mach. Intell., 2020

CiteFuse enables multi-modal analysis of CITE-seq data.

[BibT_eX]

[DOI]

Bioinform., 2020

2019

Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis.

[BibT_eX]

[DOI]

BMC Bioinform., December, 2019

AdaSampling for Positive-Unlabeled and Label Noise Learning With Bioinformatics Applications.

[BibT_eX]

[DOI]

IEEE Trans. Cybern., 2019

An Uncertainty Visual Analytics Framework for fMRI Functional Connectivity.

[BibT_eX]

[DOI]

Neuroinformatics, 2019

scDC: single cell differential composition analysis.

[BibT_eX]

[DOI]

BMC Bioinform., 2019

Impact of similarity metrics on single-cell RNA-seq data clustering.

[BibT_eX]

[DOI]

Briefings Bioinform., 2019

New Parallel Algorithms for All Pairwise Computation on Large HPC Clusters.

[BibT_eX]

[DOI]

Proceedings of the 20th International Conference on Parallel and Distributed Computing, 2019

2017

Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells.

[BibT_eX]

[DOI]

Bioinform., 2017

Positive unlabeled learning via wrapper-based adaptive sampling.

[BibT_eX]

[DOI]

Pengyi Yang

Wei Liu

Jean Yee Hwa Yang

Proceedings of the Twenty-Sixth International Joint Conference on Artificial Intelligence, 2017

2016

Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015.

[BibT_eX]

[DOI]

BMC Bioinform., February, 2016

NoisyGOA: Noisy GO annotations prediction using taxonomic and semantic similarity.

[BibT_eX]

[DOI]

Comput. Biol. Chem., 2016

Positive-unlabeled ensemble learning for kinase substrate prediction from dynamic phosphoproteomics data.

[BibT_eX]

[DOI]

Bioinform., 2016

2015

Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2015

2014

Sample Subset Optimization Techniques for Imbalanced and Ensemble Learning Problems in Bioinformatics Applications.

[BibT_eX]

[DOI]

IEEE Trans. Cybern., 2014

Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway.

[BibT_eX]

[DOI]

Bioinform., 2014

2013

Ensemble-Based Wrapper Methods for Feature Selection and Class Imbalance Learning.

[BibT_eX]

[DOI]

Proceedings of the Advances in Knowledge Discovery and Data Mining, 2013

2012

Improving X!Tandem on Peptide Identification from Mass Spectrometry by Self-Boosted Percolator.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

OCAP: an open comprehensive analysis pipeline for iTRAQ.

[BibT_eX]

[DOI]

Penghao Wang

Pengyi Yang

Jean Yee Hwa Yang

Bioinform., 2012

2011

Gene-gene interaction filtering with ensemble of filters.

[BibT_eX]

[DOI]

BMC Bioinform., 2011

Sample Subset Optimization for Classifying Imbalanced Biological Data.

[BibT_eX]

[DOI]

Proceedings of the Advances in Knowledge Discovery and Data Mining, 2011

2010

A clustering based hybrid system for biomarker selection and sample classification of mass spectrometry data.

[BibT_eX]

[DOI]

Neurocomputing, 2010

A multi-filter enhanced genetic ensemble system for gene selection and sample classification of microarray data.

[BibT_eX]

[DOI]

BMC Bioinform., 2010

A genetic ensemble approach for gene-gene interaction identification.

[BibT_eX]

[DOI]

BMC Bioinform., 2010

A dynamic wavelet-based algorithm for pre-processing tandem mass spectrometry data.

[BibT_eX]

[DOI]

Bioinform., 2010

Genetic Algorithm-Based Multi-objective Optimisation for QoS-Aware Web Services Composition.

[BibT_eX]

[DOI]

Proceedings of the Knowledge Science, 2010

2009

An Agent-Based Hybrid System for Microarray Data Analysis.

[BibT_eX]

[DOI]

IEEE Intell. Syst., 2009

An Embedded Two-Layer Feature Selection Approach for Microarray Data Analysis.

[BibT_eX]

[DOI]

Pengyi Yang

Zili Zhang

IEEE Intell. Informatics Bull., 2009

Multiagent Framework for Bio-data Mining.

[BibT_eX]

[DOI]

Proceedings of the Rough Sets and Knowledge Technology, 4th International Conference, 2009

2008

An Ensemble of Classifiers with Genetic Algorithm Based Feature Selection.

[BibT_eX]

[DOI]

Zili Zhang

Pengyi Yang

IEEE Intell. Informatics Bull., 2008

A Clustering Based Hybrid System for Mass Spectrometry Data Analysis.

[BibT_eX]

[DOI]

Pengyi Yang

Zili Zhang

Proceedings of the Pattern Recognition in Bioinformatics, 2008

A Hybrid Approach to Selecting Susceptible Single Nucleotide Polymorphisms for Complex Disease Analysis.

[BibT_eX]

[DOI]

Pengyi Yang

Zili Zhang

Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008

2007

Hybrid Methods to Select Informative Gene Sets in Microarray Data Classification.

[BibT_eX]

[DOI]

Pengyi Yang

Zili Zhang

Proceedings of the AI 2007: Advances in Artificial Intelligence, 2007

Pengyi Yang

Timeline

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Bibliography

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