Gemma L. Holliday

According to our database1, Gemma L. Holliday authored at least 19 papers between 2005 and 2018.

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Bibliography

2018
Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites.
Nucleic Acids Res., 2018

2017
InterPro in 2017 - beyond protein family and domain annotations.
Nucleic Acids Res., 2017

Biocuration in the structure-function linkage database: the anatomy of a superfamily.
Database, 2017

2016
Reaction Decoder Tool (RDT): extracting features from chemical reactions.
Bioinform., 2016

2015
The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations.
Database, 2015

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.
Database, 2015

2014
Predicting the Functions and Specificity of Triterpenoid Synthases: A Mechanism-Based Multi-intermediate Docking Approach.
PLoS Computational Biology, 2014

The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes.
Nucleic Acids Res., 2014

The Structure-Function Linkage Database.
Nucleic Acids Res., 2014

2013
The EBI enzyme portal.
Nucleic Acids Res., 2013

2012
Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies.
PLoS Computational Biology, 2012

MACiE: exploring the diversity of biochemical reactions.
Nucleic Acids Res., 2012

FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies.
Nucleic Acids Res., 2012

2010
The CoFactor database: organic cofactors in enzyme catalysis.
Bioinform., 2010

2009
Small Molecule Subgraph Detector (SMSD) toolkit.
J. Cheminformatics, 2009

Metal-MACiE: a database of metals involved in biological catalysis.
Bioinform., 2009

2007
MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms.
Nucleic Acids Res., 2007

2006
Chemical Markup, XML, and the World Wide Web. 6. CMLReact, an XML Vocabulary for Chemical Reactions.
J. Chem. Inf. Model., 2006

2005
MACiE: a database of enzyme reaction mechanisms.
Bioinform., 2005


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