Patricia C. Babbitt

According to our database1, Patricia C. Babbitt authored at least 33 papers between 1999 and 2019.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
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Links

On csauthors.net:

Bibliography

2019
InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
Nucleic Acids Res., 2019

Effusion: prediction of protein function from sequence similarity networks.
Bioinform., 2019

2018
New computational approaches to understanding molecular protein function.
PLoS Computational Biology, 2018

2017
An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins.
PLoS Computational Biology, 2017

InterPro in 2017 - beyond protein family and domain annotations.
Nucleic Acids Res., 2017

Biocuration in the structure-function linkage database: the anatomy of a superfamily.
Database, 2017

2016
DASP3: identification of protein sequences belonging to functionally relevant groups.
BMC Bioinform., 2016

2015
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.
Database, 2015

2014
Predicting the Functions and Specificity of Triterpenoid Synthases: A Mechanism-Based Multi-intermediate Docking Approach.
PLoS Computational Biology, 2014

The Structure-Function Linkage Database.
Nucleic Acids Res., 2014

Prediction of Substrates for Glutathione Transferases by Covalent Docking.
J. Chem. Inf. Model., 2014

2013
Biases in the Experimental Annotations of Protein Function and Their Effect on Our Understanding of Protein Function Space.
PLoS Computational Biology, 2013

Discovery of new enzymes and metabolic pathways by using structure and genome context.
Nature, 2013

2012
Pythoscape: a framework for generation of large protein similarity networks.
Bioinform., 2012

2011
Improving the quality of protein similarity network clustering algorithms using the network edge weight distribution.
Bioinform., 2011

2010
Quantitative Comparison of Catalytic Mechanisms and Overall Reactions in Convergently Evolved Enzymes: Implications for Classification of Enzyme Function.
PLoS Computational Biology, 2010

2009
Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies.
PLoS Computational Biology, 2009

An Atlas of the Thioredoxin Fold Class Reveals the Complexity of Function-Enabling Adaptations.
PLoS Computational Biology, 2009

A Mapping of Drug Space from the Viewpoint of Small Molecule Metabolism.
PLoS Computational Biology, 2009

2008
Evolutionarily Conserved Substrate Substructures for Automated Annotation of Enzyme Superfamilies.
PLoS Computational Biology, 2008

2007
Evolution of Function in the "Two Dinucleotide Binding Domains" Flavoproteins.
PLoS Computational Biology, 2007

structureViz: linking Cytoscape and UCSF Chimera.
Bioinform., 2007

2006
The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse.
Nucleic Acids Res., 2006

Automated discovery of 3D motifs for protein function annotation.
Bioinform., 2006

2005
Representing Structure-Function Relationships in Mechanistically Diverse Enzyme Superfamilies.
Proceedings of the Biocomputing 2005, 2005

Introduction to Informatics Approaches in Structural Genomics: Modeling and Representation of Function from Macromolecular STructure.
Proceedings of the Biocomputing 2005, 2005

2004
Session Introduction.
Proceedings of the Biocomputing 2004, 2004

2003
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells.
Nucleic Acids Res., 2003

The Structure Superposition Database.
Nucleic Acids Res., 2003

Intersect: identification and visualization of overlaps in database search results.
Bioinform., 2003

Informatics Approaches in Structural Genomics - Session Introduction.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

2001
ViewFeature: Integrated Feature Analysis and Visualization.
Proceedings of the 6th Pacific Symposium on Biocomputing, 2001

1999
Shotgun: getting more from sequence similarity searches.
Bioinform., 1999


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