Jan Ellenberg

According to our database, Jan Ellenberg authored at least 16 papers between 2001 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Simulating structurally variable nuclear pore complexes for microscopy.

Maria Theiss, Jean-Karim Hériché, Craig Russell, David Helekal, Alisdair Soppitt, Jonas Ries, Jan Ellenberg, Alvis Brazma, Virginie Uhlmann

Bioinform., October, 2023

2018

ChromoTrace: Computational reconstruction of 3D chromosome configurations for super-resolution microscopy.

Carl Barton, Sandro Morganella, Øyvind Ødegård-Fougner, Stephanie Alexander, Jonas Ries, Tomas W. Fitzgerald, Jan Ellenberg, Ewan Birney

PLoS Comput. Biol., 2018

Experimental and computational framework for a dynamic protein atlas of human cell division.

Yin Cai, M. Julius Hossain, Jean-Karim Hériché, Antonio Z. Politi, Nike Walther, Birgit Koch, Malte Wachsmuth, Bianca Nijmeijer, Moritz Kueblbeck, Marina Martinic-Kavur, Rene Ladurner, Stephanie Alexander, Jan-Michael Peters, Jan Ellenberg

Nat., 2018

2016

The cellular microscopy phenotype ontology.

Simon Jupp, James Malone, Tony Burdett, Jean-Karim Hériché, Eleanor Williams, Jan Ellenberg, Helen E. Parkinson, Gabriella Rustici

J. Biomed. Semant., 2016

2015

FUN-L: gene prioritization for RNAi screens.

Jonathan G. Lees, Jean-Karim Hériché, Ian Morilla, José María Fernández, Priit Adler, Martin Krallinger, Jaak Vilo, Alfonso Valencia, Jan Ellenberg, Juan A. G. Ranea, Christine A. Orengo

Bioinform., 2015

2013

Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay.

Grégoire Pau, Thomas Walter, Beate Neumann, Jean-Karim Hériché, Jan Ellenberg, Wolfgang Huber

BMC Bioinform., 2013

2010

Automatic Analysis of Live Cell Image Sequences to determine Temporal Mitotic Phenotypes.

Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Annelie Wünsche, Jan Ellenberg, Roland Eils, Karl Rohr

Proceedings of the Bildverarbeitung für die Medizin 2010 - Algorithmen - Systeme, 2010

2008

A genome wide RNAI screen by time lapse microscopy in order to identify mitotic genes - computational aspects and challenges.

Thomas Walter, Michael Held, Beate Neumann, Jean-Karim Hériché, Christian Conrad, Rainer Pepperkok, Jan Ellenberg

Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

2007

Compensation of global movement for improved tracking of cells in time-lapse confocal microscopy image sequences.

Il-Han Kim, William J. Godinez, Nathalie Harder, Felipe Mora-Bermúdez, Jan Ellenberg, Roland Eils, Karl Rohr

Proceedings of the Medical Imaging 2007: Image Processing, 2007

Determination of Mitotic Delays in 3D Fluorescence Microscopy Images of Human Cells Using an Error-Correcting Finite State Machine.

Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr

Proceedings of the Bildverarbeitung für die Medizin 2007, 2007

2006

Automated Analysis of the Mitotic Phases of Human Cells in 3D Fluorescence Microscopy Image Sequences.

Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

Time-lapse microscopy-based genome wide RNAi screening in live human cells.

Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Phil Rogers, Rainer Pepperkok, Jan Ellenberg

Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Automated recognition of mitotic patterns in fluorescence microscopy images of human cells.

Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr

Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Feature Selection for Evaluating Fluorescence Microscopy Images in Genome-Wide Cell Screens.

Vassili Kovalev, Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr

Proceedings of the 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2006), 2006

Automated Analysis of Mitotic Phenotypes in Fluorescence Microscopy Images of Human Cells.

Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr

Proceedings of the Bildverarbeitung für die Medizin 2006, Algorithmen, Systeme, Anwendungen, Proceedings des Workshops vom 19., 2006

2001

New Tools for Visualization and Quantification in Dynamic Processes: Application to the Nuclear Envelope Dynamics During Mitosis.

Julian Mattes, Johannes Fieres, Joël Beaudouin, Daniel Gerlich, Jan Ellenberg, Roland Eils

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001