Xi Yang

According to our database, Xi Yang authored at least 33 papers between 2018 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Clinical concept and relation extraction using prompt-based machine reading comprehension.

Cheng Peng, Xi Yang, Zehao Yu, Jiang Bian, William R. Hogan, Yonghui Wu

J. Am. Medical Informatics Assoc., August, 2023

A study of generative large language model for medical research and healthcare.

Cheng Peng, Xi Yang, Aokun Chen, Kaleb E. Smith, Nima M. Pournejatian, Anthony B. Costa, Cheryl Martin, Mona G. Flores, Ying Zhang, Tanja Magoc, Gloria P. Lipori, Duane A. Mitchell, Naykky Singh Ospina, Mustafa M. Ahmed, William R. Hogan, Elizabeth A. Shenkman, Yi Guo, Jiang Bian, Yonghui Wu

npj Digit. Medicine, 2023

Assess the documentation of cognitive tests and biomarkers in electronic health records via natural language processing for Alzheimer's disease and related dementias.

Zhaoyi Chen, Hansi Zhang, Xi Yang, Songzi Wu, Xing He, Jie Xu, Jingchuan Guo, Mattia Prosperi, Fei Wang, Hua Xu, Yong Chen, Hui Hu, Steven DeKosky, Matthew Farrer, Yi Guo, Yonghui Wu, Jiang Bian

Int. J. Medical Informatics, 2023

Clinical Concept and Relation Extraction Using Prompt-based Machine Reading Comprehension.

Cheng Peng, Xi Yang, Zehao Yu, Jiang Bian, William R. Hogan, Yonghui Wu

CoRR, 2023

Contextualized Medication Information Extraction Using Transformer-based Deep Learning Architectures.

Aokun Chen, Zehao Yu, Xi Yang, Yi Guo, Jiang Bian, Yonghui Wu

CoRR, 2023

2022

A large language model for electronic health records.

Xi Yang, Aokun Chen, Nima M. Pournejatian, Hoo Chang Shin, Kaleb E. Smith, Christopher Parisien, Colin Compas, Cheryl Martin, Anthony B. Costa, Mona G. Flores, Ying Zhang, Tanja Magoc, Christopher A. Harle, Gloria P. Lipori, Duane A. Mitchell, William R. Hogan, Elizabeth A. Shenkman, Jiang Bian, Yonghui Wu

npj Digit. Medicine, 2022

Identify diabetic retinopathy-related clinical concepts and their attributes using transformer-based natural language processing methods.

Zehao Yu, Xi Yang, Gianna L. Sweeting, Yinghan Ma, Skylar E. Stolte, Ruogu Fang, Yonghui Wu

BMC Medical Informatics Decis. Mak., 2022

SODA: A Natural Language Processing Package to Extract Social Determinants of Health for Cancer Studies.

Zehao Yu, Xi Yang, Chong Dang, Prakash Adekkanattu, Braja Gopal Patra, Yifan Peng, Jyotishman Pathak, Debbie L. Wilson, Ching-Yuan Chang, Wei-Hsuan Lo-Ciganic, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu

CoRR, 2022

GatorTron: A Large Clinical Language Model to Unlock Patient Information from Unstructured Electronic Health Records.

Xi Yang, Nima M. Pournejatian, Hoo Chang Shin, Kaleb E. Smith, Christopher Parisien, Colin Compas, Cheryl Martin, Mona G. Flores, Ying Zhang, Tanja Magoc, Christopher A. Harle, Gloria P. Lipori, Duane A. Mitchell, William R. Hogan, Elizabeth A. Shenkman, Jiang Bian, Yonghui Wu

CoRR, 2022

Identify Cancer Patients at Risk for Heart Failure using Electronic Health Record and Genetic Data.

Zehao Yu, Xi Yang, Yiqing Chen, Ruogu Fang, William R. Hogan, Yan Gong, Yonghui Wu

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

A Preliminary Study of Extracting Pulmonary Nodules and Nodule Characteristics from Radiology Reports Using Natural Language Processing.

Shuang Yang, Xi Yang, Tianchen Lyu, Xing He, Dejana Braithwaite, Hiren J. Mehta, Yi Guo, Yonghui Wu, Jiang Bian

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

2021

Extracting social determinants of health from electronic health records using natural language processing: a systematic review.

Braja Gopal Patra, Mohit M. Sharma, Veer Vekaria, Prakash Adekkanattu, Olga V. Patterson, Benjamin S. Glicksberg, Lauren A. Lepow, Euijung Ryu, Joanna M. Biernacka, Al'ona Furmanchuk, Thomas J. George, William R. Hogan, Yonghui Wu, Xi Yang, Jiang Bian, Myrna Weissman, Priya Wickramaratne, J. John Mann, Mark Olfson, Thomas R. Campion Jr., Mark G. Weiner, Jyotishman Pathak

J. Am. Medical Informatics Assoc., 2021

Clinical Relation Extraction Using Transformer-based Models.

Xi Yang, Zehao Yu, Yi Guo, Jiang Bian, Yonghui Wu

CoRR, 2021

Identify Diabetic Retinopathy-related Clinical Concepts Using Transformer-based Natural Language Processing Methods.

Zehao Yu, Xi Yang, Gianna L. Sweeting, Yinghan Ma, Skylar E. Stolte, Ruogu Fang, Yonghui Wu

Proceedings of the 9th IEEE International Conference on Healthcare Informatics, 2021

Transformer-based named entity recognition for parsing clinical trial eligibility criteria.

Shubo Tian, Arslan Erdengasileng, Xi Yang, Yi Guo, Yonghui Wu, Jinfeng Zhang, Jiang Bian, Zhe He

Proceedings of the BCB '21: 12th ACM International Conference on Bioinformatics, 2021

Data and Model Biases in Social Media Analyses: A Case Study of COVID-19 Tweets.

Yunpeng Zhao, Pengfei Yin, Yongqiu Li, Xing He, Jingcheng Du, Cui Tao, Yi Guo, Mattia Prosperi, Pierangelo Veltri, Xi Yang, Yonghui Wu, Jiang Bian

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Developing an Ontology for Social and Behavioral Determinants of Health.

Hansi Zhang, Xi Yang, Thomas J. George, William R. Hogan, Jiang Bian, Yonghui Wu

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models.

Zehao Yu, Xi Yang, Chong Dang, Songzi Wu, Prakash Adekkanattu, Jyotishman Pathak, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

Clinical concept extraction using transformers.

Xi Yang, Jiang Bian, William R. Hogan, Yonghui Wu

J. Am. Medical Informatics Assoc., 2020

Identifying relations of medications with adverse drug events using recurrent convolutional neural networks and gradient boosting.

Xi Yang, Jiang Bian, Ruogu Fang, Ragnhildur I. Bjarnadottir, William R. Hogan, Yonghui Wu

J. Am. Medical Informatics Assoc., 2020

Assessing mental health signals among sexual and gender minorities using Twitter data.

Yunpeng Zhao, Yi Guo, Xing He, Yonghui Wu, Xi Yang, Mattia Prosperi, Yanghua Jin, Jiang Bian

Health Informatics J., 2020

A Natural Language Processing Tool to Extract Quantitative Smoking Status from Clinical Narratives.

Xi Yang, Hanyuan Yang, Tianchen Lyu, Shuang Yang, Yi Guo, Jiang Bian, Hua Xu, Yonghui Wu

Proceedings of the 8th IEEE International Conference on Healthcare Informatics, 2020

Developing and Validating a Computable Phenotype for the Identification of Transgender and Gender Nonconforming Individuals and Subgroups.

Yi Guo, Xing He, Tianchen Lyu, Hansi Zhang, Yonghui Wu, Xi Yang, Zhaoyi Chen, Merry J. Markham, François Modave, Mengjun Xie, William R. Hogan, Christopher A. Harle, Elizabeth Shenkman, Jiang Bian

Proceedings of the AMIA 2020, 2020

2019

A study of deep learning methods for de-identification of clinical notes in cross-institute settings.

Xi Yang, Tianchen Lyu, Qian Li, Chih-Yin Lee, Jiang Bian, William R. Hogan, Yonghui Wu

BMC Medical Informatics Decis. Mak., 2019

ALOHA: developing an interactive graph-based visualization for dietary supplement knowledge graph through user-centered design.

Xing He, Rui Zhang, Rubina F. Rizvi, Jake Vasilakes, Xi Yang, Yi Guo, Zhe He, Mattia Prosperi, Jinhai Huo, Jordan Alpert, Jiang Bian

BMC Medical Informatics Decis. Mak., 2019

A Study of Deep Learning Methods for De-identification of Clinical Notes at Cross Institute Settings.

Xi Yang, Tianchen Lyu, Chih-Yin Lee, Jiang Bian, William R. Hogan, Yonghui Wu

Proceedings of the 2019 IEEE International Conference on Healthcare Informatics, 2019

STAT: A Web-based Semantic Text Annotation Tool to Assist Building Mental Health Knowledge Base.

Xing He, Hansi Zhang, Xi Yang, Yi Guo, Jiang Bian

Proceedings of the 2019 IEEE International Conference on Healthcare Informatics, 2019

Identifying Cancer Patients at Risk for Heart Failure Using Machine Learning Methods.

Xi Yang, Yan Gong, Nida Waheed, Keith March, Jiang Bian, William R. Hogan, Yonghui Wu

Proceedings of the AMIA 2019, 2019

2018

OC-2-KB: integrating crowdsourcing into an obesity and cancer knowledge base curation system.

Juan Antonio Lossio-Ventura, William R. Hogan, François Modave, Yi Guo, Zhe He, Xi Yang, Hansi Zhang, Jiang Bian

BMC Medical Informatics Decis. Mak., 2018

Detecting Medications and Adverse Drug Events in Clinical Notes Using Recurrent Neural Networks.

Xi Yang, Jiang Bian, Yonghui Wu

Proceedings of the 1st International Workshop on Medication and Adverse Drug Event Detection, 2018

Assessing Mental Health Signals Among Sexual and Gender Minorities using Twitter Data.

Yunpeng Zhao, Yi Guo, Xing He, Jinhai Huo, Yonghui Wu, Xi Yang, Jiang Bian

Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018

Prototyping an Interactive Visualization of Dietary Supplement Knowledge Graph.

Xing He, Rui Zhang, Rubina F. Rizvi, Jake Vasilakes, Xi Yang, Yi Guo, Zhe He, Mattia Prosperi, Jiang Bian

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Combine Factual Medical Knowledge and Distributed Word Representation to Improve Clinical Named Entity Recognition.

Yonghui Wu, Xi Yang, Jiang Bian, Yi Guo, Hua Xu, William R. Hogan

Proceedings of the AMIA 2018, 2018