Rui Zhang

According to our database, Rui Zhang authored at least 77 papers between 2012 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Complementary and Integrative Health Information in the literature: its lexicon and named entity recognition.

Huixue Zhou, Robin Austin, Sheng-Chieh Lu, Greg M. Silverman, Yuqi Zhou, Halil Kilicoglu, Hua Xu, Rui Zhang

J. Am. Medical Informatics Assoc., January, 2024

2023

An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C).

Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Dalton Schutte, Rui Zhang, Masoud Rouhizadeh, John D. Osborne, Yongqun He, Umit Topaloglu, Stephanie S. Hong, Joel H. Saltz, Thomas Schaffter, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu

J. Am. Medical Informatics Assoc., November, 2023

Extracting Complementary and Integrative Health Approaches in Electronic Health Records.

Huixue Zhou, Greg M. Silverman, Zhongran Niu, Jenzi Silverman, Roni Evans, Robin Austin, Rui Zhang

J. Heal. Informatics Res., September, 2023

Representing and utilizing clinical textual data for real world studies: An OHDSI approach.

Vipina Kuttichi Keloth, Juan M. Banda, Michael J. Gurley, Paul M. Heider, Georgina Kennedy, Hongfang Liu, Feifan Liu, Timothy A. Miller, Karthik Natarajan, Olga V. Patterson, Yifan Peng, Kalpana Raja, Ruth M. Reeves, Masoud Rouhizadeh, Jianlin Shi, Xiaoyan Wang, Yanshan Wang, Wei-Qi Wei, Andrew E. Williams, Rui Zhang, Rimma Belenkaya, Christian G. Reich, Clair Blacketer, Patrick B. Ryan, George Hripcsak, Noémie Elhadad, Hua Xu

J. Biomed. Informatics, June, 2023

Editorial: Explainable artificial intelligence for critical healthcare applications.

Zhe He, Rui Zhang, Gayo Diallo, Zhengxing Huang, Benjamin S. Glicksberg

Frontiers Artif. Intell., February, 2023

A Cross-institutional Evaluation on Breast Cancer Phenotyping NLP Algorithms on Electronic Health Records.

Sicheng Zhou, Nan Wang, Liwei Wang, Ju Sun, Anne H. Blaes, Hongfang Liu, Rui Zhang

CoRR, 2023

A Symptom-Based Natural Language Processing Surveillance Pipeline for Post-COVID-19 Patients.

Greg M. Silverman, Geetanjali Rajamani, Nicholas E. Ingraham, James K. Glover, Himanshu S. Sahoo, Michael Usher, Rui Zhang, Farha Ikramuddin, Tanya E. Melnik, Genevieve B. Melton, Christopher J. Tignanelli

Proceedings of the MEDINFO 2023 - The Future Is Accessible, 2023

Advanced Care Planning Content Encoding with Natural Language Processing.

Benjamin C. Knoll, Melissa Gunderson, Geetanjali Rajamani, Elizabeth C. Wick, Alexis Colley, Elizabeth Lindemann, Rubina F. Rizvi, Molly Diethelm, Gretchen M. Hultman, Logan Pierce, Rui Zhang, Genevieve B. Melton

Proceedings of the MEDINFO 2023 - The Future Is Accessible, 2023

Repurposing Drugs for Alzheimer's Diseases through Link Prediction on Biomedical Literature.

Yongkang Xiao, Yu Hou, Huixue Zhou, Gayo Diallo, Marcelo Fiszman, Julian Wolfson, Halil Kilicoglu, You Chen, Hua Xu, William G. Mantyh, Rui Zhang

Proceedings of the 11th IEEE International Conference on Healthcare Informatics, 2023

2022

A conversational agent system for dietary supplements use.

Esha Singh, Anusha Bompelli, Ruyuan Wan, Jiang Bian, Serguei Pakhomov, Rui Zhang

BMC Medical Informatics Decis. Mak., 2022

Classifying the lifestyle status for Alzheimer's disease from clinical notes using deep learning with weak supervision.

Zitao Shen, Dalton Schutte, Yoonkwon Yi, Anusha Bompelli, Fang Yu, Yanshan Wang, Rui Zhang

BMC Medical Informatics Decis. Mak., 2022

Discovering novel drug-supplement interactions using SuppKG generated from the biomedical literature.

Dalton Schutte, Jake Vasilakes, Anusha Bompelli, Yuqi Zhou, Marcelo Fiszman, Hua Xu, Halil Kilicoglu, Jeffrey R. Bishop, Terrence Adam, Rui Zhang

J. Biomed. Informatics, 2022

CancerBERT: a cancer domain-specific language model for extracting breast cancer phenotypes from electronic health records.

Sicheng Zhou, Nan Wang, Liwei Wang, Hongfang Liu, Rui Zhang

J. Am. Medical Informatics Assoc., 2022

Predicting Cancer Treatments Induced Cardiotoxicity of Breast Cancer Patients.

Sicheng Zhou, Rui Zhang, Anne H. Blaes, Chetan Shenoy, György J. Simon

CoRR, 2022

Annotating Music Therapy, Chiropractic and Aquatic Exercise Using Electronic Health Record.

Huixue Zhou, Greg M. Silverman, Zhongran Niu, Jenzi Silverman, Rui Zhang, Roni Evans, Robin Austin

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

Racial Disparities in Alzheimer's Disease and Alzheimer's Disease-Related Dementias from the Disease Progression Perspective.

Haozuo Zhao, Haitao Chu, Sicheng Zhou, Fang Yu, Xianghua Luo, Rui Zhang

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

Canine Parvovirus Diagnosis Classification Utilizing Veterinary Free-Text Notes.

Zhecheng Sheng, Emma Bollig, Jennifer Granick, Rui Zhang, Amanda Beaudoin

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

MTAP - A Distributed Framework for NLP Pipelines.

Benjamin C. Knoll, Reed McEwan, Raymond L. Finzel, Greg M. Silverman, Rui Zhang, Serguei V. S. Pakhomov, Genevieve B. Melton

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

CIHLex: Complementary and Integrative Health Lexicon.

Huixue Zhou, Robin Austin, Halil Kilicoglu, Sheng-Chieh Lu, Rui Zhang

Proceedings of the AMIA 2022, 2022

Semi-automated Clinical Content Curation of COVID-19 Chatbot Remote Patient Monitoring Solution.

Tanya E. Melnik, Joshua A. Thompson, Jake Vasilakes, Tucker Annis, Sicheng Zhou, Dalton Schutte, Genevieve Melton-Meaux, Susan Pleasants, Rui Zhang

Proceedings of the AMIA 2022, 2022

2021

Drug repurposing for COVID-19 via knowledge graph completion.

Rui Zhang, Dimitar Hristovski, Dalton Schutte, Andrej Kastrin, Marcelo Fiszman, Halil Kilicoglu

J. Biomed. Informatics, 2021

Deep learning approaches for extracting adverse events and indications of dietary supplements from clinical text.

Yadan Fan, Sicheng Zhou, Yifan Li, Rui Zhang

J. Am. Medical Informatics Assoc., 2021

NLP Methods for Extraction of Symptoms from Unstructured Data for Use in Prognostic COVID-19 Analytic Models.

Greg M. Silverman, Himanshu S. Sahoo, Nicholas Ingraham, Monica Lupei, Michael A. Puskarich, Michael Usher, James Dries, Raymond L. Finzel, Eric Murray, John Sartori, György J. Simon, Rui Zhang, Genevieve B. Melton, Christopher J. Tignanelli, Serguei V. S. Pakhomov

J. Artif. Intell. Res., 2021

An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C).

Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Rui Zhang, John D. Osborne, Masoud Rouhizadeh, Yongqun He, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu

CoRR, 2021

CancerBERT: a BERT model for Extracting Breast Cancer Phenotypes from Electronic Health Records.

Sicheng Zhou, Liwei Wang, Nan Wang, Hongfang Liu, Rui Zhang

CoRR, 2021

Discovering novel drug-supplement interactions using a dietary supplements knowledge graph generated from the biomedical literature.

Dalton Schutte, Jake Vasilakes, Anusha Bompelli, Yuqi Zhou, Marcelo Fiszman, Hua Xu, Halil Kilicoglu, Jeffrey R. Bishop, Terrence Adam, Rui Zhang

CoRR, 2021

Social determinants of health in the era of artificial intelligence with electronic health records: A systematic review.

Anusha Bompelli, Yanshan Wang, Ruyuan Wan, Esha Singh, Yuqi Zhou, Lin Xu, David Oniani, Bhavani Singh Agnikula Kshatriya, Joyce E. Balls-Berry, Rui Zhang

CoRR, 2021

Extracting Lifestyle Factors for Alzheimer's Disease from Clinical Notes Using Deep Learning with Weak Supervision.

Zitao Shen, Yoonkwon Yi, Anusha Bompelli, Fang Yu, Yanshan Wang, Rui Zhang

CoRR, 2021

Identification of Dietary Supplement Use from Electronic Health Records Using Transformer-based Language Models.

Sicheng Zhou, Dalton Schutte, Aiwen Xing, Jiyang Chen, Julian Wolfson, Zhe He, Fang Yu, Rui Zhang

Proceedings of the 9th IEEE International Conference on Healthcare Informatics, 2021

Deep Learning Approaches for Breast Cancer Characteristics Extraction from Electronic Health Records.

Sicheng Zhou, Liwei Wang, Nan Wang, Sunyang Fu, Chetan Shenoy, Anne H. Blaes, Hongfang Liu, Rui Zhang

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Assessing the Use of Prescription Drugs in Obese Respondents in the National Health and Nutrition Examination Survey.

Laura A. Barrett, Aiwen Xing, Elizabeth Steidley, Terrence J. Adam, Rui Zhang, Zhe He

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

Selected articles from the Fourth International Workshop on Semantics-Powered Data Mining and Analytics (SEPDA 2019).

Zhe He, Cui Tao, Jiang Bian, Rui Zhang

BMC Medical Informatics Decis. Mak., 2020

Mining Twitter to assess the determinants of health behavior toward human papillomavirus vaccination in the United States.

Hansi Zhang, Christopher Wheldon, Adam G. Dunn, Cui Tao, Jinhai Huo, Rui Zhang, Mattia Prosperi, Yi Guo, Jiang Bian

J. Am. Medical Informatics Assoc., 2020

Assessing the enrichment of dietary supplement coverage in the Unified Medical Language System.

Jake Vasilakes, Anusha Bompelli, Jeffrey R. Bishop, Terrence J. Adam, Olivier Bodenreider, Rui Zhang

J. Am. Medical Informatics Assoc., 2020

iDISK: the integrated DIetary Supplements Knowledge base.

Rubina F. Rizvi, Jake Vasilakes, Terrence J. Adam, Genevieve B. Melton, Jeffrey R. Bishop, Jiang Bian, Cui Tao, Rui Zhang

J. Am. Medical Informatics Assoc., 2020

When text simplification is not enough: could a graph-based visualization facilitate consumers' comprehension of dietary supplement information?

Xing He, Rui Zhang, Jordan Alpert, Sicheng Zhou, Terrence J. Adam, Aantaki Raisa, Yifan Peng, Hansi Zhang, Jiang Bian

CoRR, 2020

Natural Language Processing Methods to Extract Lifestyle Exposures for Alzheimer's Disease from Clinical Notes.

Yoonkwon Yi, Zitao Shen, Anusha Bompelli, Fang Yu, Yanshan Wang, Rui Zhang

Proceedings of the 8th IEEE International Conference on Healthcare Informatics, 2020

A Prototype Conversational Agent for Dietary Supplements.

Esha Singh, Anusha Bompelli, Andrew Yang, Andrew Wang, Serguei Pakhomov, Rui Zhang

Proceedings of the 8th IEEE International Conference on Healthcare Informatics, 2020

Deep Learning Approach to Parse Eligibility Criteria in Dietary Supplements Clinical Trials Following OMOP Common Data Model.

Anusha Bompelli, Jianfu Li, Yiqi Xu, Nan Wang, Yanshan Wang, Terrence J. Adam, Zhe He, Rui Zhang

Proceedings of the AMIA 2020, 2020

Comparing NLP Systems to Extract Entities of Eligibility Criteria in Dietary Supplements Clinical Trials Using NLP-ADAPT.

Anusha Bompelli, Greg M. Silverman, Raymond L. Finzel, Jake Vasilakes, Benjamin Knoll, Serguei Pakhomov, Rui Zhang

Proceedings of the Artificial Intelligence in Medicine, 2020

2019

ALOHA: developing an interactive graph-based visualization for dietary supplement knowledge graph through user-centered design.

Xing He, Rui Zhang, Rubina F. Rizvi, Jake Vasilakes, Xi Yang, Yi Guo, Zhe He, Mattia Prosperi, Jinhai Huo, Jordan Alpert, Jiang Bian

BMC Medical Informatics Decis. Mak., 2019

Selected articles from the Third International Workshop on Semantics-Powered Data Analytics (SEPDA 2018).

Zhe He, Jiang Bian, Cui Tao, Rui Zhang

BMC Medical Informatics Decis. Mak., 2019

Mining Twitter to Assess the Determinants of Health Behavior towards Human Papillomavirus Vaccination in the United States.

Hansi Zhang, Christopher Wheldon, Adam G. Dunn, Cui Tao, Jinhai Huo, Rui Zhang, Mattia Prosperi, Yi Guo, Jiang Bian

CoRR, 2019

Analyzing Social Media Data to Understand Consumers' Information Needs on Dietary Supplements.

Rubina F. Rizvi, Yefeng Wang, Thao Nguyen, Jake Vasilakes, Jiang Bian, Zhe He, Rui Zhang

CoRR, 2019

Identifying Cardiomegaly in ChestX-ray8 Using Transfer Learning.

Sicheng Zhou, Xinyuan Zhang, Rui Zhang

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Normalizing Dietary Supplement Product Names Using the RxNorm Model.

Jake Vasilakes, Yadan Fan, Rubina F. Rizvi, Anusha Bompelli, Olivier Bodenreider, Rui Zhang

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Analyzing Social Media Data to Understand Consumer Information Needs on Dietary Supplements.

Rubina F. Rizvi, Yefeng Wang, Thao Nguyen, Jake Vasilakes, Jiang Bian, Zhe He, Rui Zhang

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Exploring the Discrepancies in Actual and Perceived Benefits of Dietary Supplements Among Obese Patients.

Zhe He, Laura A. Barrett, Rubina F. Rizvi, Seyedeh Neelufar Payrovnaziri, Rui Zhang

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Analysis of Twitter to Identify Topics Related to Eating Disorder Symptoms.

Sicheng Zhou, Yunpeng Zhao, Rubina F. Rizvi, Jiang Bian, Ann F. Haynos, Rui Zhang

Proceedings of the 2019 IEEE International Conference on Healthcare Informatics, 2019

2018

Discovering and identifying New York heart association classification from electronic health records.

Rui Zhang, Sisi Ma, Liesa Shanahan, Jessica Munroe, Sarah Horn, Stuart M. Speedie

BMC Medical Informatics Decis. Mak., 2018

Introduction: selected extended articles from the 2nd International Workshop on Semantics-Powered Data Analytics (SEPDA 2017).

Zhe He, Cui Tao, Jiang Bian, Rui Zhang, Jingshan Huang

BMC Medical Informatics Decis. Mak., 2018

Using natural language processing methods to classify use status of dietary supplements in clinical notes.

Yadan Fan, Rui Zhang

BMC Medical Informatics Decis. Mak., 2018

Detecting Signals of Associations Between Dietary Supplement Use and Mental Disorders from Twitter.

Yefeng Wang, Yunpeng Zhao, Jiang Bian, Rui Zhang

Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018

Estimating New York Heart Association Classification for Heart Failure Patients from Information in the Electronic Health Record.

Sisi Ma, Rui Zhang, Jessica Munroe, Lindsey Shanahan, Sarah Horn, Stuart M. Speedie

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Prototyping an Interactive Visualization of Dietary Supplement Knowledge Graph.

Xing He, Rui Zhang, Rubina F. Rizvi, Jake Vasilakes, Xi Yang, Yi Guo, Zhe He, Mattia Prosperi, Jiang Bian

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017

Detecting clinically relevant new information in clinical notes across specialties and settings.

Rui Zhang, Serguei V. S. Pakhomov, Elliot G. Arsoniadis, Janet T. Lee, Yan Wang, Genevieve B. Melton

BMC Medical Informatics Decis. Mak., 2017

Advancing Alzheimer's research: A review of big data promises.

Rui Zhang, György J. Simon, Fang Yu

Int. J. Medical Informatics, 2017

Mining Adverse Events of Dietary Supplements from Product Labels by Topic Modeling.

Yefeng Wang, Divya R. Gunashekar, Terrence J. Adam, Rui Zhang

Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Phenotyping and Visualizing Infusion-Related Reactions for Breast Cancer Patients.

Deyu Sun, Gopal Sarda, Steven J. Skube, Anne H. Blaes, Saif S. Khairat, Genevieve B. Melton, Rui Zhang

Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Detecting Signals of Interactions Between Warfarin and Dietary Supplements in Electronic Health Records.

Yadan Fan, Terrence J. Adam, Reed McEwan, Serguei V. S. Pakhomov, Genevieve B. Melton, Rui Zhang

Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

A Study on Phenotyping and Visualizing Black Box Warnings of Antineoplastic Breast Cancer Medications.

Deyu Sun, Gopal Sarda, Steven J. Skube, Anne H. Blaes, Rui Zhang, Genevieve B. Melton

Proceedings of the Summit on Clinical Research Informatics, 2017

Classifying Supplement Use Status in Clinical Notes.

Yadan Fan, Lu He, Serguei V. S. Pakhomov, Genevieve B. Melton, Rui Zhang

Proceedings of the Summit on Clinical Research Informatics, 2017

Automatic methods to extract New York heart association classification from clinical notes.

Rui Zhang, Sisi Ma, Liesa Shanahan, Jessica Munroe, Sarah Horn, Stuart M. Speedie

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Evaluating automatic methods to extract patients' supplement use from clinical reports.

Yadan Fan, Lu He, Rui Zhang

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Causal Phenotyping for Susceptibility to Cardiotoxicity from Antineoplastic Breast Cancer Medications.

Deyu Sun, György J. Simon, Steven J. Skube, Anne H. Blaes, Genevieve B. Melton, Rui Zhang

Proceedings of the AMIA 2017, 2017

2016

Classification of use status for dietary supplements in clinical notes.

Yadan Fan, Lu He, Rui Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Term Coverage of Dietary Supplements Ingredients in Product Labels.

Yefeng Wang, Rui Zhang, Terrence J. Adam

Proceedings of the AMIA 2016, 2016

2015

Healthcare Data Analytics. Chandan K. Reddy and Charu C. Aggarwal. Boca Raton, FL: Chapman & Hall/CRC Press (2015) 724 pp.

Rui Zhang

J. Biomed. Informatics, 2015

Evaluation of Herbal and Dietary Supplement Resource Term Coverage.

Nivedha Manohar, Terrence J. Adam, Serguei V. S. Pakhomov, Genevieve B. Melton, Rui Zhang

Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

Evaluating Term Coverage of Herbal and Dietary Supplements in Electronic Health Records.

Rui Zhang, Nivedha Manohar, Elliot G. Arsoniadis, Yan Wang, Terrence J. Adam, Serguei V. S. Pakhomov, Genevieve B. Melton

Proceedings of the AMIA 2015, 2015

2014

Using semantic predications to uncover drug-drug interactions in clinical data.

Rui Zhang, Michael J. Cairelli, Marcelo Fiszman, Graciela Rosemblat, Halil Kilicoglu, Thomas C. Rindflesch, Serguei V. S. Pakhomov, Genevieve B. Melton

J. Biomed. Informatics, 2014

Using Language Models to Identify Relevant New Information in Inpatient Clinical Note.

Rui Zhang, Serguei V. S. Pakhomov, Janet T. Lee, Genevieve B. Melton

Proceedings of the AMIA 2014, 2014

Evolving Career Landscapes in Biomedical and Health Informatics.

Rui Zhang, William R. Hersh, Genevieve B. Melton, Yang Huang, Laura K. Wiley, Julie Doberne, Nawanan Theera-Ampornpunt

Proceedings of the AMIA 2014, 2014

2013

Navigating Longitudinal Clinical Notes with an Automated Method for Detecting New Information.

Rui Zhang, Serguei V. S. Pakhomov, Janet T. Lee, Genevieve B. Melton

Proceedings of the MEDINFO 2013, 2013

Preparing for Informatics Careers and Trends in the Age of Meaningful Use.

Nawanan Theera-Ampornpunt, Kai Zheng, Yang Gong, Jennifer J. Boehne, David C. Kaelber, Rui Zhang, Sashank Kaushik, Ryan Shaw, Tiffany Kelley, Saif S. Khairat

Proceedings of the AMIA 2013, 2013

2012

Automated identification of relevant new information in clinical narrative.

Rui Zhang, Serguei V. S. Pakhomov, Genevieve B. Melton

Proceedings of the ACM International Health Informatics Symposium, 2012

Automated Assessment of Medical Training Evaluation Text.

Rui Zhang, Serguei V. S. Pakhomov, Sophia Gladding, Michael Aylward, Emily Borman-Shoap, Genevieve B. Melton

Proceedings of the AMIA 2012, 2012