Xiujuan Lei
Orcid: 0000-0002-9901-1732
According to our database1,
Xiujuan Lei
authored at least 124 papers
between 2007 and 2024.
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Bibliography
2024
A deep learning framework for predicting molecular property based on multi-type features fusion.
Comput. Biol. Medicine, February, 2024
Solving multimodal optimization problems by a knowledge-driven brain storm optimization algorithm.
Appl. Soft Comput., January, 2024
2023
RMDGCN: Prediction of RNA methylation and disease associations based on graph convolutional network with attention mechanism.
PLoS Comput. Biol., December, 2023
A point crowding-degree based evolutionary algorithm for many-objective optimization.
Memetic Comput., December, 2023
Identify potential circRNA-disease associations through a multi-objective evolutionary algorithm.
Inf. Sci., November, 2023
circ2CBA: prediction of circRNA-RBP binding sites combining deep learning and attention mechanism.
Frontiers Comput. Sci., October, 2023
Comput. Biol. Medicine, February, 2023
A dual graph neural network for drug-drug interactions prediction based on molecular structure and interactions.
PLoS Comput. Biol., January, 2023
Microbe-Disease Association Prediction Using RGCN Through Microbe-Drug-Disease Network.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
Biomarker Identification via a Factorization Machine-Based Neural Network With Binary Pairwise Encoding.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
2022
Predicting miRNA-Disease Associations Based On Multi-View Variational Graph Auto-Encoder With Matrix Factorization.
IEEE J. Biomed. Health Informatics, 2022
Predicting Microbe-Disease Association Based on Multiple Similarities and LINE Algorithm.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
Identifying Gene Signatures for Cancer Drug Repositioning Based on Sample Clustering.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
CircR2Disease v2.0: An Updated Web Server for Experimentally Validated circRNA-disease Associations and Its Application.
Genom. Proteom. Bioinform., 2022
Comput. Biol. Chem., 2022
Briefings Bioinform., 2022
MLRDFM: a multi-view Laplacian regularized DeepFM model for predicting miRNA-disease associations.
Briefings Bioinform., 2022
IEEE Access, 2022
Proceedings of the Advances in Swarm Intelligence - 13th International Conference, 2022
2021
IEEE J. Biomed. Health Informatics, 2021
Prediction of disease-associated circRNAs via circRNA-disease pair graph and weighted nuclear norm minimization.
Knowl. Based Syst., 2021
Predicting CircRNA-Disease Associations Based on Improved Weighted Biased Meta-Structure.
J. Comput. Sci. Technol., 2021
Inf. Sci., 2021
An unsupervised method for histological image segmentation based on tissue cluster level graph cut.
Comput. Medical Imaging Graph., 2021
Logistic regression algorithm to identify candidate disease genes based on reliable protein-protein interaction network.
Sci. China Inf. Sci., 2021
Identifying the sequence specificities of circRNA-binding proteins based on a capsule network architecture.
BMC Bioinform., 2021
Prediction of RBP binding sites on circRNAs using an LSTM-based deep sequence learning architecture.
Briefings Bioinform., 2021
A comprehensive survey on computational methods of non-coding RNA and disease association prediction.
Briefings Bioinform., 2021
Artif. Intell. Rev., 2021
Predicting Microbe-Disease Association via Tripartite Network and Relation Graph Convolutional Network.
Proceedings of the Bioinformatics Research and Applications - 17th International Symposium, 2021
2020
BMC Bioinform., December, 2020
Introducing Heuristic Information Into Ant Colony Optimization Algorithm for Identifying Epistasis.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020
IEEE ACM Trans. Comput. Biol. Bioinform., 2020
A decomposition-based evolutionary algorithm with adaptive weight adjustment for many-objective problems.
Soft Comput., 2020
Relational completion based non-negative matrix factorization for predicting metabolite-disease associations.
Knowl. Based Syst., 2020
Predicting Metabolite-Disease Associations Based on Linear Neighborhood Similarity with Improved Bipartite Network Projection Algorithm.
Complex., 2020
Predicting novel CircRNA-disease associations based on random walk and logistic regression model.
Comput. Biol. Chem., 2020
CircRNA-disease associations prediction based on metapath2vec++ and matrix factorization.
Big Data Min. Anal., 2020
ISGm1A: Integration of Sequence Features and Genomic Features to Improve the Prediction of Human m<sub>1</sub>A RNA Methylation Sites.
IEEE Access, 2020
Disease-Pathway Association Prediction Based on Random Walks With Restart and PageRank.
IEEE Access, 2020
Identification of Pathway-Specific Protein Domain by Incorporating Hyperparameter Optimization Based on 2D Convolutional Neural Network.
IEEE Access, 2020
Inferring Candidate CircRNA-Disease Associations by Bi-random Walk Based on CircRNA Regulatory Similarity.
Proceedings of the Advances in Swarm Intelligence - 11th International Conference, 2020
Graph Convolution Networks Using Message Passing and Multi-Source Similarity Features for Predicting circRNA-Disease Association.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020
2019
Random walk based method to identify essential proteins by integrating network topology and biological characteristics.
Knowl. Based Syst., 2019
Moth-flame optimization-based algorithm with synthetic dynamic PPI networks for discovering protein complexes.
Knowl. Based Syst., 2019
Predicting disease-genes based on network information loss and protein complexes in heterogeneous network.
Inf. Sci., 2019
Predicting the associations between microbes and diseases by integrating multiple data sources and path-based HeteSim scores.
Neurocomputing, 2019
Identify protein complexes based on PageRank algorithm and architecture on dynamic PPI networks.
Int. J. Data Min. Bioinform., 2019
BRWSP: Predicting circRNA-Disease Associations Based on Biased Random Walk to Search Paths on a Multiple Heterogeneous Network.
Complex., 2019
Complex., 2019
Detecting overlapping protein complexes in weighted PPI network based on overlay network chain in quotient space.
BMC Bioinform., 2019
Identifying Cancer genes by combining two-rounds RWR based on multiple biological data.
BMC Bioinform., 2019
Protein complex detection based on flower pollination mechanism in multi-relation reconstructed dynamic protein networks.
BMC Bioinform., 2019
Prediction of miRNA-circRNA associations based on k-NN multi-label with random walk restart on a heterogeneous network.
Big Data Min. Anal., 2019
Predicting Essential Proteins Based on Second-Order Neighborhood Information and Information Entropy.
IEEE Access, 2019
A New Method for Identification of Essential Proteins by Information Entropy of Protein Complex and Subcellular Localization.
Proceedings of the Advances in Swarm Intelligence - 10th International Conference, 2019
Adaptive Differential Privacy of Character and Its Application for Genome Data Sharing.
Proceedings of the 2019 International Conference on Networking and Network Applications, 2019
Essential Protein Detection from Protein-Protein Interaction Networks Using Immune Algorithm.
Proceedings of the Bioinformatics and Biomedical Engineering, 2019
Proceedings of the IEEE Congress on Evolutionary Computation, 2019
Proceedings of the IEEE Congress on Evolutionary Computation, 2019
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019
Proceedings of the Brain Storm Optimization Algorithms: Concepts, 2019
2018
Predicting essential proteins based on RNA-Seq, subcellular localization and GO annotation datasets.
Knowl. Based Syst., 2018
An Adaptive Decomposition-based Multi-objective Evolutionary Algorithm for Fuzzy Portfolio Selection.
J. Inf. Hiding Multim. Signal Process., 2018
Topology potential based seed-growth method to identify protein complexes on dynamic PPI data.
Inf. Sci., 2018
Int. J. Comput. Commun. Control, 2018
A Decomposition-Based Multiobjective Evolutionary Algorithm with Adaptive Weight Adjustment.
Complex., 2018
BMC Syst. Biol., 2018
CircR2Disease: a manually curated database for experimentally supported circular RNAs associated with various diseases.
Database J. Biol. Databases Curation, 2018
ACO Based Core-Attachment Method to Detect Protein Complexes in Dynamic PPI Networks.
Proceedings of the Advances in Swarm Intelligence - 9th International Conference, 2018
Mining Overlapping Protein Complexes in PPI Network Based on Granular Computation in Quotient Space.
Proceedings of the Intelligent Computing Theories and Application, 2018
Two-step Random Walk Algorithm to Identify Cancer Genes Based on Various Biological Data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018
2017
An improvement decomposition-based multi-objective evolutionary algorithm with uniform design.
Knowl. Based Syst., 2017
Complex., 2017
Solving non-convex/non-smooth economic load dispatch problems via an enhanced particle swarm optimization.
Appl. Soft Comput., 2017
Proceedings of the Advances in Swarm Intelligence - 8th International Conference, 2017
Proceedings of the Simulated Evolution and Learning - 11th International Conference, 2017
Genomic Privacy Preserving Framework for High-Order SNPs Linkage Disequilibrium on Correlated Sequences.
Proceedings of the International Conference on Networking and Network Applications, 2017
Genome-Wide Identification of Essential Proteins by Integrating RNA-seq, Subcellular Location and Complexes Information.
Proceedings of the Intelligent Computing Theories and Application, 2017
An Improvement Based Evolutionary Algorithm with Adaptive Weight Adjustment for Many-Objective Optimization.
Proceedings of the 13th International Conference on Computational Intelligence and Security, 2017
Proceedings of the 2017 IEEE Congress on Evolutionary Computation, 2017
Predicting Essential Proteins Based on Gene Expression Data, Subcellular Localization and PPI Data.
Proceedings of the Bio-inspired Computing: Theories and Applications, 2017
2016
Identification of dynamic protein complexes based on fruit fly optimization algorithm.
Knowl. Based Syst., 2016
Protein complex identification through Markov clustering with firefly algorithm on dynamic protein-protein interaction networks.
Inf. Sci., 2016
Detecting protein complexes from DPINs by density based clustering with Pigeon-Inspired Optimization Algorithm.
Sci. China Inf. Sci., 2016
Proceedings of the Advances in Swarm Intelligence, 7th International Conference, 2016
Proceedings of the Advances in Swarm Intelligence, 7th International Conference, 2016
A Novel Fitness Function Based on Decomposition for Multi-objective Optimization Problems.
Proceedings of the Intelligent Computing Theories and Application, 2016
A New Evolutionary Algorithm Based on Decomposition for Multi-Objective Optimization Problems.
Proceedings of the 12th International Conference on Computational Intelligence and Security, 2016
A decomposition based evolutionary algorithm with uniform design for multi-objective optimization.
Proceedings of the IEEE Congress on Evolutionary Computation, 2016
Identifying protein complexes in dynamic protein-protein interaction networks based on Cuckoo Search algorithm.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
Mining protein complexes based on topology potential from weighted dynamic PPI network.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
Detecting protein complexes from DPINs by OPTICS based on particle swarm optimization.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016
2015
A Novel Evolutionary Algorithm Based on Decomposition and Adaptive Weight Adjustment for Synthesis Gas Production.
Proceedings of the 11th International Conference on Computational Intelligence and Security, 2015
2014
Proceedings of the Advances in Swarm Intelligence - 5th International Conference, 2014
Proceedings of the Advances in Swarm Intelligence - 5th International Conference, 2014
Proceedings of the IEEE Congress on Evolutionary Computation, 2014
Detecting functional modules in dynamic protein-protein interaction networks using Markov Clustering and Firefly Algorithm.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014
2013
The clustering model and algorithm of PPI network based on propagating mechanism of artificial bee colony.
Inf. Sci., 2013
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
2012
Clustering PPI data based on Improved functional-flow model through Quantum-behaved PSO.
Int. J. Data Min. Bioinform., 2012
An Improved bacteria Foraging Optimization Algorithm based on intuitionistic fuzzy Set for Clustering PPI Networks.
Proceedings of the Quantitative Logic and Soft Computing, 2012
2011
Clustering PPI network based on functional flow model through artificial bee colony algorithm.
Proceedings of the Seventh International Conference on Natural Computation, 2011
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011
2010
An improved projection pursuit clustering model and its application based on Quantum-behaved PSO.
Proceedings of the Sixth International Conference on Natural Computation, 2010
Proceedings of the Fifth International Conference on Bio-Inspired Computing: Theories and Applications, 2010
Proceedings of the Fifth International Conference on Bio-Inspired Computing: Theories and Applications, 2010
Proceedings of the Fifth International Conference on Bio-Inspired Computing: Theories and Applications, 2010
Proceedings of the Artificial Intelligence and Computational Intelligence, 2010
Proceedings of the Artificial Intelligence and Computational Intelligence, 2010
2009
2-D Maximum-Entropy Thresholding Image Segmentation Method Based on Second-Order Oscillating PSO.
Proceedings of the Fifth International Conference on Natural Computation, 2009
Mobile Robot Path Planning with Complex Constraints Based on the Second-Order Oscillating Particle Swarm Optimization Algorithm.
Proceedings of the CSIE 2009, 2009 WRI World Congress on Computer Science and Information Engineering, March 31, 2009
Proceedings of the Artificial Intelligence and Computational Intelligence, 2009
2008
Proceedings of the International Joint Conference on Neural Networks, 2008
Two-Dimensional Maximum Entropy Image Segmentation Method Based on Quantum-Behaved Particle Swarm Optimization Algorithm.
Proceedings of the Fourth International Conference on Natural Computation, 2008
The aircraft departure scheduling based on second-order oscillating particle swarm optimization algorithm.
Proceedings of the IEEE Congress on Evolutionary Computation, 2008
The aircraft departure scheduling based on particle swarm optimization combined with simulated annealing algorithm.
Proceedings of the IEEE Congress on Evolutionary Computation, 2008
2007
Proceedings of the Third International Conference on Natural Computation, 2007
Proceedings of the Third International Conference on Natural Computation, 2007