Zekun Yin

According to our database, Zekun Yin authored at least 33 papers between 2017 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

Exploiting the Performance Potential of Extreme-Scale Earthquake Simulation: Achieving 86.7 PFLOPS With Over 39 Million Cores.

Lin Gan, Wubing Wan, Zekun Yin, Wenqiang Wang, Yilong Li, Zhenguo Zhang, Zhong He, Ping Gao, Xiaohui Duan, Weiguo Liu, Wei Xue, Haohuan Fu, Guangwen Yang, Xiaofei Chen

IEEE Trans. Parallel Distributed Syst., April, 2026

SMEStencil: Optimizing High-Order Stencils on ARM Multicore Using SME Unit.

Yinuo Wang, Tianqi Mao, Lin Gan, Wubing Wan, Zeyu Song, Jiayu Fu, Lanke He, Wenqiang Wang, Zekun Yin, Wei Xue, Guangwen Yang

IEEE Trans. Parallel Distributed Syst., March, 2026

RabbitVar: Ultra-fast and accurate somatic small-variant calling on multi-core architectures.

Hao Zhang, Lin Gan, Zekun Yin, Lifeng Yan, Honglei Song, Qixin Chang, Tong Zhang, Yanjie Wei, Beifang Niu, Bertil Schmidt, Weiguo Liu

Future Gener. Comput. Syst., 2026

SLS: A Scalable Logic Subgraph Framework for Temporal Web Analytics and Hybrid Search.

Jiajia Nie, Zekun Yin, Haoliang Sun, Weipeng Jiang, Wei Han, Bo Bai

Proceedings of the Companion Proceedings of the ACM Web Conference 2026, 2026

Scalable Anomaly Detection for Temporal Web Streams via Approximate Nearest Neighbor Search.

Chuangen Gao, Haoliang Sun, Zekun Yin, Weipeng Jiang, Wei Han, Bo Bai

Proceedings of the Companion Proceedings of the ACM Web Conference 2026, 2026

2025

MMStencil: Optimizing High-order Stencils on Multicore CPU using Matrix Unit.

Yinuo Wang, Tianqi Mao, Lin Gan, Wubing Wan, Zeyu Song, Jiayu Fu, Lanke He, Wenqiang Wang, Zekun Yin, Wei Xue, Guangwen Yang

CoRR, July, 2025

RabbitBAM: Accelerating BAM File Manipulation on Multi-Core Platforms.

Lifeng Yan, Zhan Zhao, Zekun Yin, Tong Zhang, Yang Yang, Fangjin Zhu, Xiaohui Duan, Bertil Schmidt, Weiguo Liu

IEEE Trans. Comput. Biol. Bioinform., 2025

RabbitTrim: An Efficient and Versatile Trimmer on Multi-Core Platforms.

Mingkai Wang, Yang Yang, Zekun Yin, Lifeng Yan, Tong Zhang, Fangjin Zhu, Xin Li, Xiaohui Duan, Bertil Schmidt, Weiguo Liu

IEEE Trans. Comput. Biol. Bioinform., 2025

SWQC: Efficient sequencing data quality control on the next-generation sunway platform.

Lifeng Yan, Zekun Yin, Tong Zhang, Fangjin Zhu, Xiaohui Duan, Bertil Schmidt, Weiguo Liu

Future Gener. Comput. Syst., 2025

RabbitSketch: a high-performance sketching library for genome analysis.

Tong Zhang, Zekun Yin, Xiaoming Xu, Lifeng Yan, Fangjin Zhu, Xiaohui Duan, Bertil Schmidt, Weiguo Liu

Bioinform., 2025

Trillion Ligands per Day: Performance-Portable Virtual Screening via Compound Database Optimization and Multi-Target Docking.

Xiaohui Duan, Cheng Shen, Gaowei Chen, Shanshan Wu, Yizhen Wang, Yizhen Chen, Qixin Chang, Qiancheng Xia, Zekun Yin, Lin Gan, Yibing Shan, Guangwen Yang, Weiguo Liu, Niu Huang

Proceedings of the International Conference for High Performance Computing, 2025

HAP: Hybrid Adaptive Parallelism for Efficient Mixture-of-Experts Inference.

Haoran Lin, Xianzhi Yu, Kang Zhao, Han Bao, Zongyuan Zhan, Ting Hu, Wulong Liu, Zekun Yin, Xin Li, Weiguo Liu

Proceedings of the 31th IEEE International Conference on Parallel and Distributed Systems, 2025

pdGRASS: A Fast Parallel Density-Aware Algorithm for Graph Spectral Sparsification.

Tiancheng Zhao, Zekun Yin, Huihai An, Xiaoyu Yang, Zhou Jin, Jiasi Shen, Helen Xu

Proceedings of the IEEE High Performance Extreme Computing Conference, 2025

SWBWA: A Highly Efficient NGS Aligner on the New Sunway Architecture.

Lifeng Yan, Zekun Yin, Qixin Chang, Tong Zhang, Zhisong Wang, Xiaohui Duan, Bertil Schmidt, Weiguo Liu

Proceedings of the Euro-Par 2025: Parallel Processing, 2025

RabbitTClust2: Fast, Scalable, and Versatile Clustering for Massive Genomic Datasets.

Tong Zhang, Xiaoming Xu, Zekun Yin, Lifeng Yan, Yang Yang, Yijie Gao, Xiaohui Duan, Bertil Schmidt, Weiguo Liu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

2024

O2ath: an OpenMP offloading toolkit for the sunway heterogeneous manycore platform.

Haoran Lin, Lifeng Yan, Qixin Chang, Haitian Lu, Chenlin Li, Quanjie He, Zeyu Song, Xiaohui Duan, Zekun Yin, Yuxuan Li, Zhao Liu, Wei Xue, Haohuan Fu, Lin Gan, Guangwen Yang, Weiguo Liu

CCF Trans. High Perform. Comput., June, 2024

FastAttention: Extend FlashAttention2 to NPUs and Low-resource GPUs.

Haoran Lin, Xianzhi Yu, Kang Zhao, Lu Hou, Zongyuan Zhan, Stanislav Kamenev, Han Bao, Ting Hu, Mingkai Wang, Qixin Chang, Siyue Sui, Weihao Sun, Jiaxin Hu, Jun Yao, Zekun Yin, Cheng Qian, Ying Zhang, Yinfei Pan, Yu Yang, Weiguo Liu

CoRR, 2024

RabbitSAlign: Accelerating Short-Read Alignment for CPU-GPU Heterogeneous Platforms.

Lifeng Yan, Zekun Yin, Jinjin Li, Yang Yang, Tong Zhang, Fangjin Zhu, Xiaohui Duan, Bertil Schmidt, Weiguo Liu

Proceedings of the Bioinformatics Research and Applications - 20th International Symposium, 2024

RabbitTrim: Highly Optimized Trimming of Illumina Sequencing Data on Multi-core Platforms.

Mingkai Wang, Zekun Yin, Lifeng Yan, Yang Yang, Fangjin Zhu, Xiaohui Duan, Xin Li, Bertil Schmidt, Weiguo Liu

Proceedings of the Bioinformatics Research and Applications - 20th International Symposium, 2024

2023

RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures.

Xiaoming Xu, Zekun Yin, Lifeng Yan, Huiguang Yi, Hua Wang, Bertil Schmidt, Weiguo Liu

Bioinform., October, 2023

RabbitFX: Efficient Framework for FASTA/Q File Parsing on Modern Multi-Core Platforms.

Hao Zhang, Honglei Song, Xiaoming Xu, Qixin Chang, Mingkai Wang, Yanjie Wei, Zekun Yin, Bertil Schmidt, Weiguo Liu

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

69.7-PFlops Extreme Scale Earthquake Simulation with Crossing Multi-faults and Topography on Sunway.

Wubing Wan, Lin Gan, Wenqiang Wang, Zekun Yin, Haodong Tian, Zhenguo Zhang, Yinuo Wang, Mengyuan Hua, Xiaohui Liu, Shengye Xiang, Zhongqiu He, Zijia Wang, Ping Gao, Xiaohui Duan, Weiguo Liu, Wei Xue, Haohuan Fu, Guangwen Yang, Xiaofei Chen, Zeyu Song, Yaojian Chen, Xin Liu, Wei Zhang

Proceedings of the International Conference for High Performance Computing, 2023

Ray-based Elastic Distributed Data Parallel Framework with Distributed Data Cache.

Haoran Lin, Xinwei Qin, Shuang Qiu, Yi Sun, Zekun Yin, Weiguo Liu

Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2023

Leveraging Data Density and Sparsity for Efficient SVM Training on GPUs.

Borui Xu, Zeyi Wen, Lifeng Yan, Zhan Zhao, Zekun Yin, Weiguo Liu, Bingsheng He

Proceedings of the IEEE International Conference on Data Mining, 2023

2022

RabbitV: fast detection of viruses and microorganisms in sequencing data on multi-core architectures.

Hao Zhang, Qixin Chang, Zekun Yin, Xiaoming Xu, Yanjie Wei, Bertil Schmidt, Weiguo Liu

Bioinform., 2022

RabbitQCPlus: More Efficient Quality Control for Sequencing Data.

Lifeng Yan, Zekun Yin, Hao Zhang, Zhan Zhao, Mingkai Wang, André Müller, Robin Kobus, Yanjie Wei, Beifang Niu, Bertil Schmidt, Weiguo Liu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

RabbitQC: high-speed scalable quality control for sequencing data.

Zekun Yin, Hao Zhang, Meiyang Liu, Wen Zhang, Honglei Song, Haidong Lan, Yanjie Wei, Beifang Niu, Bertil Schmidt, Weiguo Liu

Bioinform., 2021

RabbitMash: accelerating hash-based genome analysis on modern multi-core architectures.

Zekun Yin, Xiaoming Xu, Jinxiao Zhang, Yanjie Wei, Bertil Schmidt, Weiguo Liu

Bioinform., 2021

2020

SLPal: Accelerating Long Sequence Alignment on Many-Core and Multi-Core Architectures.

Xiaoming Xu, Yuandong Chan, Kai Xu, Jikai Zhang, Xiaoning Wang, Zekun Yin, Weiguo Liu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019

XLCS: A New Bit-Parallel Longest Common Subsequence Algorithm on Xeon Phi Clusters.

Zekun Yin, Hao Zhang, Kai Xu, Yuandong Chan, Shaoliang Peng, Xiaoning Wang, Bertil Schmidt, Weiguo Liu

Proceedings of the 21st IEEE International Conference on High Performance Computing and Communications; 17th IEEE International Conference on Smart City; 5th IEEE International Conference on Data Science and Systems, 2019

Efficient Parallel Sort on AVX-512-Based Multi-Core and Many-Core Architectures.

Zekun Yin, Tianyu Zhang, André Müller, Hui Liu, Yanjie Wei, Bertil Schmidt, Weiguo Liu

Proceedings of the 21st IEEE International Conference on High Performance Computing and Communications; 17th IEEE International Conference on Smart City; 5th IEEE International Conference on Data Science and Systems, 2019

DGCF: A Distributed Greedy Clustering Framework for Large-scale Genomic Sequences.

Zekun Yin, Xiaoming Xu, Kaichao Fan, Ruilin Li, Weizhong Li, Weiguo Liu, Beifang Niu

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2017

18.9-Pflops nonlinear earthquake simulation on Sunway TaihuLight: enabling depiction of 18-Hz and 8-meter scenarios.

Haohuan Fu, Conghui He, Bingwei Chen, Zekun Yin, Zhenguo Zhang, Wenqiang Zhang, Tingjian Zhang, Wei Xue, Weiguo Liu, Wanwang Yin, Guangwen Yang, Xiaofei Chen

Proceedings of the International Conference for High Performance Computing, 2017