Yuko Makita

According to our database, Yuko Makita authored at least 16 papers between 2004 and 2013.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2013

PosMed: ranking genes and bioresources based on Semantic Web Association Study.

Yuko Makita, Norio Kobayashi, Yuko Yoshida, Koji Doi, Yoshiki Mochizuki, Koro Nishikata, Akihiro Matsushima, Satoshi Takahashi, Manabu Ishii, Terue Takatsuki, Rinki Bhatia, Zolzaya Khadbaatar, Hajime Watabe, Hiroshi Masuya, Tetsuro Toyoda

Nucleic Acids Res., 2013

PromoterCAD: data-driven design of plant regulatory DNA.

Robert Sidney Cox III, Koro Nishikata, Sayoko Shimoyama, Yuko Yoshida, Minami Matsui, Yuko Makita, Tetsuro Toyoda

Nucleic Acids Res., 2013

PosMed: A Biomedical Entity Prioritisation Tool Based on Statistical Inference over Literature and the Semantic Web.

Norio Kobayashi, Yuko Makita, Manabu Ishii, Akihiro Matsushima, Yoshiki Mochizuki, Koji Doi, Koro Nishikata, David Gifford, Terue Takatsuki, Hiroshi Masuya, Tetsuro Toyoda

Proceedings of the 6th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2013

2012

Development of Linked Open Data for Bioresources.

Hiroshi Masuya, Terue Takatsuki, Yuko Makita, Yuko Yoshida, Yoshiki Mochizuki, Norio Kobayashi, Atsushi Yoshiki, Yukio Nakamura, Tetsuro Toyoda, Yuichi Obata

Proceedings of the Semantic Technology, Second Joint International Conference, 2012

2011

The RIKEN integrated database of mammals.

Hiroshi Masuya, Yuko Makita, Norio Kobayashi, Koro Nishikata, Yuko Yoshida, Yoshiki Mochizuki, Koji Doi, Terue Takatsuki, Kazunori Waki, Nobuhiko Tanaka, Manabu Ishii, Akihiro Matsushima, Satoshi Takahashi, Atsushi Hijikata, Kouji Kozaki, Teiichi Furuichi, Hideya Kawaji, Shigeharu Wakana, Yukio Nakamura, Atsushi Yoshiki, Takehide Murata, Kaoru Fukami-Kobayashi, S. Sujatha Mohan, Osamu Ohara, Yoshihide Hayashizaki, Riichiro Mizoguchi, Yuichi Obata, Tetsuro Toyoda

Nucleic Acids Res., 2011

2009

PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning.

Yuko Yoshida, Yuko Makita, Naohiko Heida, Satomi Asano, Akihiro Matsushima, Manabu Ishii, Yoshiki Mochizuki, Hiroshi Masuya, Shigeharu Wakana, Norio Kobayashi, Tetsuro Toyoda

Nucleic Acids Res., 2009

OmicBrowse: a Flash-based high-performance graphics interface for genomic resources.

Akihiro Matsushima, Norio Kobayashi, Yoshiki Mochizuki, Manabu Ishii, Shuji Kawaguchi, Takaho A. Endo, Ryo Umetsu, Yuko Makita, Tetsuro Toyoda

Nucleic Acids Res., 2009

Amino-Acid Residue Association Models for Large Scale Protein-Protein Interaction Prediction.

K. Rao Raghuraj, Kyaw Tun, Yuko Makita, Samavedham Lakshminarayanan, Pawan K. Dhar

Silico Biol., 2009

2008

DBTBS: a database of transcriptional regulation in <i>Bacillus subtilis</i> containing upstream intergenic conservation information.

Nicolas Sierro, Yuko Makita, Michiel J. L. de Hoon, Kenta Nakai

Nucleic Acids Res., 2008

A Secure Data Repository Integrating Huge Volumes of Digital Contents as a Semantic Web.

Norio Kobayashi, Yuko Makita, Eli Kaminuma, Shuji Kawaguchi, Yuko Yoshida, Yoshiki Mochizuki, Akihiro Matsushima, Manabu Ishii, Ryo Umetsu, Satomi Asano, Naohiko Heida, Tetsuya Sakurai, Takashi Kuromori, Kazuo Shinozaki, Tetsuro Toyoda

Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008

2007

Melina II: a web tool for comparisons among several predictive algorithms to find potential motifs from promoter regions.

Toshiyuki Okumura, Hiroki Makiguchi, Yuko Makita, Riu Yamashita, Kenta Nakai

Nucleic Acids Res., 2007

Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes.

Yuko Makita, Michiel J. L. de Hoon, Antoine Danchin

BMC Bioinform., 2007

2005

Prediction of Transcriptional Terminators in <i>Bacillus subtilis</i> and Related Species.

Michiel J. L. de Hoon, Yuko Makita, Kenta Nakai, Satoru Miyano

PLoS Comput. Biol., 2005

Bayesian Joint Prediction of Associated Transcription Factors in Bacillus subtilis.

Yuko Makita, Michiel J. L. de Hoon, Naotake Ogasawara, Satoru Miyano, Kenta Nakai

Proceedings of the Biocomputing 2005, 2005

2004

BTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics.

Yuko Makita, Mitsuteru Nakao, Naotake Ogasawara, Kenta Nakai

Nucleic Acids Res., 2004

Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data.

Michiel J. L. de Hoon, Yuko Makita, Seiya Imoto, Kazuo Kobayashi, Naotake Ogasawara, Kenta Nakai, Satoru Miyano

Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004