Yoshihide Hayashizaki

According to our database1, Yoshihide Hayashizaki authored at least 33 papers between 2002 and 2019.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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In proceedings 
Article 
PhD thesis 
Other 

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Bibliography

2019
Update of the FANTOM web resource: expansion to provide additional transcriptome atlases.
Nucleic Acids Research, 2019

2018
Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.
PLoS Computational Biology, 2018

2017
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.
Nucleic Acids Research, 2017

2016
On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase.
Database, 2016

FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki.
Database, 2016

2015
Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response.
PLoS Computational Biology, 2015

2014
A promoter-level mammalian expression atlas.
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Nature, 2014

MOIRAI: A Compact Workflow System for CAGE Analysis.
BMC Bioinformatics, 2014

2011
The RIKEN integrated database of mammals.
Nucleic Acids Research, 2011

Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.
Nucleic Acids Research, 2011

SAMStat: monitoring biases in next generation sequencing data.
Bioinformatics, 2011

Optimization of turn-back primers in isothermal amplification.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2010
NGSView: an extensible open source editor for next-generation sequencing data.
Bioinformatics, 2010

2009
Data-driven normalization strategies for high-throughput quantitative RT-PCR.
BMC Bioinformatics, 2009

SDRF2GRAPH - a visualization tool of a spreadsheet-based description of experimental processes.
BMC Bioinformatics, 2009

TagDust - a program to eliminate artifacts from next generation sequencing data.
Bioinformatics, 2009

Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite.
Bioinformatics, 2009

2007
Large-scale clustering of CAGE tag expression data.
BMC Bioinformatics, 2007

2006
CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.
Nucleic Acids Research, 2006

LOCATE: a mouse protein subcellular localization database.
Nucleic Acids Research, 2006

PhosphoregDB: The tissue and sub-cellular distribution of mammalian protein kinases and phosphatases.
BMC Bioinformatics, 2006

Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes.
BMC Bioinformatics, 2006

2005
RNAdb - a comprehensive mammalian noncoding RNA database.
Nucleic Acids Research, 2005

Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa).
Bioinformatics, 2005

2004
EICO (Expression-based Imprint Candidate Organizer): finding disease-related imprinted genes.
Nucleic Acids Research, 2004

Large-scale collection and characterization of promoters of human and mouse genes.
In Silico Biology, 2004

Integrated analysis of the genome and the transcriptome by FANTOM.
Briefings in Bioinformatics, 2004

2003
MaXML: mouse annotation XML.
In Silico Biology, 2003

Construction of reliable protein-protein interaction networks with a new interaction generality measure.
Bioinformatics, 2003

2002
The DT40 web site: sampling and connecting the genes of a B cell line.
Nucleic Acids Research, 2002

READ: RIKEN Expression Array Database.
Nucleic Acids Research, 2002

FANTOM DB: database of Functional Annotation of RIKEN Mouse cDNA Clones.
Nucleic Acids Research, 2002

Wavelet Profiles: Their Application in Oryza sativa DNA Sequence Analysis.
Proceedings of the 1st IEEE Computer Society Bioinformatics Conference, 2002


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