Yuri I. Wolf

According to our database, Yuri I. Wolf authored at least 22 papers between 1992 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2021

COG database update: focus on microbial diversity, model organisms, and widespread pathogens.

Michael Y. Galperin, Yuri I. Wolf, Kira S. Makarova, Roberto Vera Alvarez, David Landsman, Eugene V. Koonin

Nucleic Acids Res., 2021

Thermodynamics of Evolution and the Origin of Life.

Vitaly Vanchurin, Yuri I. Wolf, Eugene V. Koonin, Mikhail I. Katsnelson

CoRR, 2021

Towards a Theory of Evolution as Multilevel Learning.

Vitaly Vanchurin, Yuri I. Wolf, Mikhail I. Katsnelson, Eugene V. Koonin

CoRR, 2021

2019

Microbial genome analysis: the COG approach.

Michael Y. Galperin, David M. Kristensen, Kira S. Makarova, Yuri I. Wolf, Eugene V. Koonin

Briefings Bioinform., 2019

2017

ATGC database and ATGC-COGs: an updated resource for micro- and macro-evolutionary studies of prokaryotic genomes and protein family annotation.

David M. Kristensen, Yuri I. Wolf, Eugene V. Koonin

Nucleic Acids Res., 2017

2015

Expanded microbial genome coverage and improved protein family annotation in the COG database.

Michael Y. Galperin, Kira S. Makarova, Yuri I. Wolf, Eugene V. Koonin

Nucleic Acids Res., 2015

2013

The Vast, Conserved Mammalian lincRNome.

David Managadze, Alexander E. Lobkovsky, Yuri I. Wolf, Svetlana A. Shabalina, Igor B. Rogozin, Eugene V. Koonin

PLoS Comput. Biol., 2013

2012

Universal Pacemaker of Genome Evolution.

Sagi Snir, Yuri I. Wolf, Eugene V. Koonin

PLoS Comput. Biol., 2012

2011

Predictability of Evolutionary Trajectories in Fitness Landscapes.

Alexander E. Lobkovsky, Yuri I. Wolf, Eugene V. Koonin

PLoS Comput. Biol., 2011

Comparison of Phylogenetic Trees and Search for a Central Trend in the "Forest of Life".

Eugene V. Koonin, Pere Puigbò, Yuri I. Wolf

J. Comput. Biol., 2011

Computational methods for Gene Orthology inference.

David M. Kristensen, Yuri I. Wolf, Arcady R. Mushegian, Eugene V. Koonin

Briefings Bioinform., 2011

2010

A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches.

David M. Kristensen, Lavanya Kannan, Michael K. Coleman, Yuri I. Wolf, Alexander Sorokin, Eugene V. Koonin, Arcady R. Mushegian

Bioinform., 2010

EREM: Parameter Estimation and Ancestral Reconstruction by Expectation-Maximization Algorithm for a Probabilistic Model of Genomic Binary Characters Evolution.

Liran Carmel, Yuri I. Wolf, Igor B. Rogozin, Eugene V. Koonin

Adv. Bioinformatics, 2010

2009

ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes.

Pavel S. Novichkov, Igor Ratnere, Yuri I. Wolf, Eugene V. Koonin, Inna Dubchak

Nucleic Acids Res., 2009

2005

An Expectation-Maximization Algorithm for Analysis of Evolution of Exon-Intron Structure of Eukaryotic Genes.

Liran Carmel, Igor B. Rogozin, Yuri I. Wolf, Eugene V. Koonin

Proceedings of the Comparative Genomics, 2005

2004

Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes.

Igor B. Rogozin, Kira S. Makarova, Yuri I. Wolf, Eugene V. Koonin

Briefings Bioinform., 2004

2003

The COG database: an updated version includes eukaryotes.

Roman L. Tatusov, Natalie D. Fedorova, John D. Jackson, Aviva R. Jacobs, Boris Kiryutin, Eugene V. Koonin, Dmitri M. Krylov, Raja Mazumder, Sergei L. Mekhedov, Anastasia N. Nikolskaya, B. Sridhar Rao, Sergei Smirnov, Alexander V. Sverdlov, Sona Vasudevan, Yuri I. Wolf, Jodie J. Yin, Darren A. Natale

BMC Bioinform., 2003

Simple stochastic birth andz death models of genome evolution: was there enough time for us to evolve?

Georgy P. Karev, Yuri I. Wolf, Eugene V. Koonin

Bioinform., 2003

2000

Winnowing Sequences from a Database Search.

Piotr Berman, Zheng Zhang, Yuri I. Wolf, Eugene V. Koonin, Webb Miller

J. Comput. Biol., 2000

1999

IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices.

Alejandro A. Schäffer, Yuri I. Wolf, Chris P. Ponting, Eugene V. Koonin, L. Aravind, Stephen F. Altschul

Bioinform., 1999

1996

Sequence Similarity Significance: Computer Simulations and Analytically obtained Bounds.

Igor A. Seledtsov, Yuri I. Wolf, Dmitry Korshunov, Kira S. Makarova

Proceedings of the German Conference on Bioinformatics, 1996

1992

DIROM: an experimental design interactive system for directed mutagenesis and nucleic acids engineering.

Kira S. Makarova, A. V. Mazin, Yuri I. Wolf, V. V. Soloviev

Comput. Appl. Biosci., 1992