Eugene V. Koonin
Orcid: 0000-0003-3943-8299Affiliations:
- National Center for Biotechnology Informatio, Bethesda, USA
According to our database1,
Eugene V. Koonin
authored at least 48 papers
between 1992 and 2022.
Collaborative distances:
Collaborative distances:
Timeline
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Online presence:
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on id.loc.gov
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on d-nb.info
On csauthors.net:
Bibliography
2022
Nucleic Acids Res., 2022
2021
COG database update: focus on microbial diversity, model organisms, and widespread pathogens.
Nucleic Acids Res., 2021
2019
2017
ATGC database and ATGC-COGs: an updated resource for micro- and macro-evolutionary studies of prokaryotic genomes and protein family annotation.
Nucleic Acids Res., 2017
Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation.
Nucleic Acids Res., 2017
2015
Expanded microbial genome coverage and improved protein family annotation in the COG database.
Nucleic Acids Res., 2015
A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea.
BMC Bioinform., 2015
2014
Proceedings of the Algorithms for Computational Biology - First International Conference, 2014
2013
2012
PLoS Comput. Biol., 2012
2011
On the Origin of DNA Genomes: Evolution of the Division of Labor between Template and Catalyst in Model Replicator Systems.
PLoS Comput. Biol., 2011
PLoS Comput. Biol., 2011
A Detailed History of Intron-rich Eukaryotic Ancestors Inferred from a Global Survey of 100 Complete Genomes.
PLoS Comput. Biol., 2011
Comparison of Phylogenetic Trees and Search for a Central Trend in the "Forest of Life".
J. Comput. Biol., 2011
2010
A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches.
Bioinform., 2010
EREM: Parameter Estimation and Ancestral Reconstruction by Expectation-Maximization Algorithm for a Probabilistic Model of Genomic Binary Characters Evolution.
Adv. Bioinformatics, 2010
2009
ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes.
Nucleic Acids Res., 2009
2007
A Rigorous Analysis of the Pattern of Intron Conservation Supports the <i>Coelomata</i> Clade of Animals.
Proceedings of the Comparative Genomics, RECOMB 2007 International Workshop, 2007
2006
Cyanobacterial response regulator PatA contains a conserved N-terminal domain (PATAN) with an alpha-helical insertion.
Bioinform., 2006
The HicAB cassette, a putative novel, RNA-targeting toxin-antitoxin system in archaea and bacteria.
Bioinform., 2006
Briefings Bioinform., 2006
2005
Modeling genome evolution with a diffusion approximation of a birth-and-death process.
Bioinform., 2005
Briefings Bioinform., 2005
An Expectation-Maximization Algorithm for Analysis of Evolution of Exon-Intron Structure of Eukaryotic Genes.
Proceedings of the Comparative Genomics, 2005
2004
Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes.
Briefings Bioinform., 2004
2003
Simple stochastic birth andz death models of genome evolution: was there enough time for us to evolve?
Bioinform., 2003
2001
The COG database: new developments in phylogenetic classification of proteins from complete genomes.
Nucleic Acids Res., 2001
Presence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a 'weak' context of the start codon.
Bioinform., 2001
The Third Georgia Tech-Emory International Conference on Bioinformatics: In Silico Biology; Bioinformatics After Human Genome (November 15-18, 2001, Atlanta, Georgia, USA).
Bioinform., 2001
A top-down method for building genome classification trees with linear binary hierarchies.
Proceedings of the Bioconsensus, 2001
2000
The COG database: a tool for genome-scale analysis of protein functions and evolution.
Nucleic Acids Res., 2000
1999
IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices.
Bioinform., 1999
1998
Sources of systematic error in functional annotation of genomes: domain rearrangement, non-orthologous gene displacement, and operon disruption.
Silico Biol., 1998
Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, 1998
1997
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997
A natural taxonomy of gene families from complete genomes.
Proceedings of the German Conference on Bioinformatics, 1997
1994
Prediction of an rRNA methyltransferase domain in human tumor-specific nucleolar protein P120.
Nucleic Acids Res., 1994
Comput. Appl. Biosci., 1994
1992
Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria.
Nucleic Acids Res., 1992
Comparative Analysis of Biopolymer Sequences: Reflections on the Validity of the Methodology and the Underlying General Principles.
Proceedings of the Mathematical Methods Of Analysis Of Biopolymer Sequences, 1992