Michele Vendruscolo

According to our database, Michele Vendruscolo authored at least 19 papers between 2002 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Using Generative Modeling to Endow with Potency Initially Inert Compounds with Good Bioavailability and Low Toxicity.

Robert I. Horne, Jared Wilson-Godber, Alicia González Díaz, Z. Faidon Brotzakis, Srijit Seal, Rebecca C. Gregory, Andrea Possenti, Sean Chia, Michele Vendruscolo

J. Chem. Inf. Model., 2024

2023

FuzPred: a web server for the sequence-based prediction of the context-dependent binding modes of proteins.

András Hatos, João M. C. Teixeira, Susana Barrera-Vilarmau, Attila Horvath, Silvio C. E. Tosatto, Michele Vendruscolo, Mónika Fuxreiter

Nucleic Acids Res., July, 2023

CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins.

Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös, Silvio C. E. Tosatto, Damiano Piovesan

Nucleic Acids Res., July, 2023

Sequence-based prediction of pH-dependent protein solubility using CamSol.

Marc Oeller, Ryan Kang, Rosie Bell, Hannes Ausserwöger, Pietro Sormanni, Michele Vendruscolo

Briefings Bioinform., March, 2023

2022

FuzDrop on AlphaFold: visualizing the sequence-dependent propensity of liquid-liquid phase separation and aggregation of proteins.

András Hatos, Silvio C. E. Tosatto, Michele Vendruscolo, Mónika Fuxreiter

Nucleic Acids Res., 2022

2021

A kinetic ensemble of the Alzheimer's Aβ peptide.

Thomas Löhr, Kai Kohlhoff, Gabriella T. Heller, Carlo Camilloni, Michele Vendruscolo

Nat. Comput. Sci., 2021

2020

Sequence-based prediction of protein binding mode landscapes.

Attila Horvath, Márton Miskei, Viktor Ambrus, Michele Vendruscolo, Mónika Fuxreiter

PLoS Comput. Biol., 2020

2018

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins.

Damiano Piovesan, Francesco Tabaro, Lisanna Paladin, Marco Necci, Ivan Micetic, Carlo Camilloni, Norman E. Davey, Zsuzsanna Dosztányi, Bálint Mészáros, Alexander Miguel Monzon, Gustavo D. Parisi, Éva Schád, Pietro Sormanni, Peter Tompa, Michele Vendruscolo, Wim F. Vranken, Silvio C. E. Tosatto

Nucleic Acids Res., 2018

Parapred: antibody paratope prediction using convolutional and recurrent neural networks.

Edgar Liberis, Petar Velickovic, Pietro Sormanni, Michele Vendruscolo, Pietro Liò

Bioinform., 2018

2015

Mapping the Protein Fold Universe Using the CamTube Force Field in Molecular Dynamics Simulations.

Predrag Kukic, Arvind Kannan, Maurits J. J. Dijkstra, Sanne Abeln, Carlo Camilloni, Michele Vendruscolo

PLoS Comput. Biol., 2015

2014

pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins.

Mihaly Varadi, Simone Kosol, Pierre Lebrun, Erica Valentini, Martin Blackledge, A. Keith Dunker, Isabella C. Felli, Julie D. Forman-Kay, Richard W. Kriwacki, Roberta Pierattelli, Joel L. Sussman, Dmitri I. Svergun, Vladimir N. Uversky, Michele Vendruscolo, David S. Wishart, Peter E. Wright, Peter Tompa

Nucleic Acids Res., 2014

ALMOST: An all atom molecular simulation toolkit for protein structure determination.

Biao Fu, Aleksandr B. Sahakyan, Carlo Camilloni, Gian Gaetano Tartaglia, Emanuele Paci, Amedeo Caflisch, Michele Vendruscolo, Andrea Cavalli

J. Comput. Chem., 2014

2011

Inversion of the Balance between Hydrophobic and Hydrogen Bonding Interactions in Protein Folding and Aggregation.

Anthony W. Fitzpatrick, Tuomas P. J. Knowles, Christopher A. Waudby, Michele Vendruscolo, Christopher M. Dobson

PLoS Comput. Biol., 2011

2009

A Condensation-Ordering Mechanism in Nanoparticle-Catalyzed Peptide Aggregation.

Stefan Auer, Antonio Trovato, Michele Vendruscolo

PLoS Comput. Biol., 2009

2008

Prediction by Graph Theoretic Measures of Structural Effects in Proteins Arising from Non-Synonymous Single Nucleotide Polymorphisms.

Tammy M. K. Cheng, Yu-En Lu, Michele Vendruscolo, Pietro Liò, Tom L. Blundell

PLoS Comput. Biol., 2008

A Generic Mechanism of Emergence of Amyloid Protofilaments from Disordered Oligomeric Aggregates.

Stefan Auer, Filip Meersman, Christopher M. Dobson, Michele Vendruscolo

PLoS Comput. Biol., 2008

Competition between protein aggregation and protein complex formation.

Sebastian Pechmann, Emmanuel D. Levy, Gian Gaetano Tartaglia, Michele Vendruscolo

BMC Bioinform., 2008

2007

Structural Reorganisation and Potential Toxicity of Oligomeric Species Formed during the Assembly of Amyloid Fibrils.

Mookyung Cheon, Iksoo Chang, Sandipan Mohanty, Leila M. Luheshi, Christopher M. Dobson, Michele Vendruscolo, Giorgio Favrin

PLoS Comput. Biol., 2007

2002

Protein folding using inter-residue contacts.

Michele Vendruscolo

Proceedings of the 1st International Symposium on 3D Data Processing Visualization and Transmission (3DPVT 2002), 2002